PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100230740051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

AP2

Protein Properties

Length: 455aa MW: 51089.6 Da PI: 8.5309

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100230740051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.5	5.3e-16	275	326	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Ote100230740051\|100230740051 275 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 326 57**************988532...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	2.5E-6	137	246	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	12.194	137	240	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.44E-9	206	242	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.7E-9	207	241	IPR001471	AP2/ERF domain
CDD	cd00018	1.23E-11	208	242	No hit	No description
Pfam	PF00847	2.1E-10	275	326	IPR001471	AP2/ERF domain
CDD	cd00018	3.92E-11	275	334	No hit	No description
SuperFamily	SSF54171	6.54E-18	275	335	IPR016177	DNA-binding domain
SMART	SM00380	3.2E-31	276	340	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.2E-18	276	334	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.203	276	334	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MCSSLRSWRT SSPAAAATPR RLKTXXXXXX XXXXYDHQQQ PYFSNGEQQD LKTIIGFQAF 60 STNSDDSAFA AQTQSPVEST GELVAYSHCP ISATTNNGLS LDVXXXXXXX XXXXTIVSAD 120 SESCKKIADT FGQRTSIYRG VTREVFADVE CDADIDGQED MKRIYGITAV EERAKQEKGV 180 KVQLDFKFLF TLSHSVFFLG GIIINSPIYL GGYDKEDKAA RAYDLAALKY WGSTATTNFP 240 ISNYSKEVEE MKHMTKQEFI ASLRRKSSGF SRGASIYRGV TRHHQQGRWQ ARIGRVAGNK 300 DLYLGTFATE EEAAEAYDIA AIKFRGMNAV TNFEMNRYDV EAIAKSPLPI GGTAKRLKLC 360 VEAXXXXXXX XXASEQHPPN SXXXXXXXXX XFCGYSASFD YPLWSALRQL DPILSPPPLP 420 PHVRQQRRHL RHFQLSESDV HTRRVLRLAS PLLLT

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MCSSLRSWRT SSPAAAATPR RLKTXXXXXX XXXXYDHQQQ PYFSNGEQQD LKTIIGFQAF  60
STNSDDSAFA AQTQSPVEST GELVAYSHCP ISATTNNGLS LDVXXXXXXX XXXXTIVSAD  120
SESCKKIADT FGQRTSIYRG VTREVFADVE CDADIDGQED MKRIYGITAV EERAKQEKGV  180
KVQLDFKFLF TLSHSVFFLG GIIINSPIYL GGYDKEDKAA RAYDLAALKY WGSTATTNFP  240
ISNYSKEVEE MKHMTKQEFI ASLRRKSSGF SRGASIYRGV TRHHQQGRWQ ARIGRVAGNK  300
DLYLGTFATE EEAAEAYDIA AIKFRGMNAV TNFEMNRYDV EAIAKSPLPI GGTAKRLKLC  360
VEAXXXXXXX XXASEQHPPN SXXXXXXXXX XFCGYSASFD YPLWSALRQL DPILSPPPLP  420
PHVRQQRRHL RHFQLSESDV HTRRVLRLAS PLLLT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269\|PubMed:12172019}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097469.1	1e-126	AP2-like ethylene-responsive transcription factor AIL6 isoform X1
Swissprot	Q6PQQ4	6e-90	BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBL	A0A4D8YE65	1e-134	A0A4D8YE65_SALSN; AP2-like factor, ANT lineage
STRING	Migut.N00586.1.p	1e-121	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2580	24	49

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] Horstman A,Willemsen V,Boutilier K,Heidstra R AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks. Trends Plant Sci., 2014. 19(3): p. 146-57 [PMID:24280109] Horstman A, et al. AIL and HDG proteins act antagonistically to control cell proliferation. Development, 2015. 142(3): p. 454-64 [PMID:25564655] Florez SL,Erwin RL,Maximova SN,Guiltinan MJ,Curtis WR Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor. BMC Plant Biol., 2015. 15: p. 121 [PMID:25976599] Lutz KA,Martin C,Khairzada S,Maliga P Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture. Plant Cell Rep., 2015. 34(10): p. 1849-56 [PMID:26156330] Horstman A, et al. The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis. Plant Physiol., 2017. 175(2): p. 848-857 [PMID:28830937] Du Y,Scheres B PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398] Horstman A,Bemer M,Boutilier K A transcriptional view on somatic embryogenesis. Regeneration (Oxf), 2017. 4(4): p. 201-216 [PMID:29299323]