PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100231140021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family SBP
Protein Properties Length: 390aa    MW: 42731.7 Da    PI: 6.5744
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100231140021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.43.1e-41125201177
                                   --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                                   +Cqv gC++dls+ k+yh+rhkvC+vhsk++vv+v+g+ qrfCqqCsrfh l efDe+krsCr+rLa+hnerrrk+q
  Ote100231140021|100231140021 125 TCQVYGCNKDLSSSKDYHKRHKVCDVHSKTAVVIVNGICQRFCQQCSRFHILAEFDEGKRSCRKRLAGHNERRRKPQ 201
                                   6**************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.3E-33119187IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.368123200IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.05E-39124205IPR004333Transcription factor, SBP-box
PfamPF031101.1E-30126199IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MESLSCGFEG RALLFADDSD FVADGPTRSR NLLKKWDGED EVDSTGFIEP LLPNSINNSF  60
LGDQCLESNG DDSKDDSPSP ANTAQDGKYA AANLLSVGNS VLSSPEPSVS AKRAKIGDSQ  120
SQVPTCQVYG CNKDLSSSKD YHKRHKVCDV HSKTAVVIVN GICQRFCQQC SRFHILAEFD  180
EGKRSCRKRL AGHNERRRKP QFNTYLGSTY FTTDASKSLF LSTVVPNGFF GLQFKELTDH  240
RRHLMLEEEE ALAVDVKLGQ SLPKSVLRFH GMGKQYPSKN CLNAPSLSEF YSSSDSACAL  300
SLLSARKQNS LSNSAAAGIP MDGPLVSEAT PQNSATSFAS DYDGKTAVLP QGTNTVNLLE  360
LSLHLHRVEH QKFYGQIKME NDNFCDSTIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-29121199684squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070914.21e-149squamosa promoter-binding-like protein 6
TrEMBLA0A2G9FVV65e-99A0A2G9FVV6_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000727456e-74(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68311933