PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100231490081

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 146aa MW: 17101.9 Da PI: 9.9045

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100231490081	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	123	2.6e-38	15	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lp GfrFhPtdeel+ +yLk+k+ + +l++ +vi+e++ ++++PwdLp ++ +++ yfF+kr++ + ++ +n +t+ g Ote100231490081\|100231490081 15 LPIGFRFHPTDEELLIHYLKRKILSLPLPA-SVIPEFEAFQLNPWDLPGEL---KEKKYFFCKRRRISMNKCSSNFSTDCG 91 699*************************.99***********554...4578******************* PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWk+tgkdk+++ + ++g+kk+++fy+gr+ k t+W+m+ey+l Ote100231490081\|100231490081 92 YWKSTGKDKQIMGGANYVIGIKKSFAFYQGRNLK---TQWIMQEYSL 135 *********99999******988866...******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-41	12	139	IPR003441	NAC domain
PROSITE profile	PS51005	40.716	15	146	IPR003441	NAC domain
Pfam	PF02365	1.2E-24	16	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MERARTEDEK EGVKLPIGFR FHPTDEELLI HYLKRKILSL PLPASVIPEF EAFQLNPWDL 60 PGELKEKKYF FCKRRRISMN KCSSNFSTDC GYWKSTGKDK QIMGGANYVI GIKKSFAFYQ 120 GRNLKTQWIM QEYSLVGHLK TPFLTQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-30	5	135	5	140	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012844037.1	2e-69	PREDICTED: NAC domain-containing protein 68
Swissprot	Q9FY93	8e-42	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A2G9G906	4e-69	A0A2G9G906_9LAMI; Uncharacterized protein
STRING	Migut.F00031.1.p	7e-69	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13250	13	18

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]