PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100231840041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TALE
Protein Properties Length: 221aa    MW: 25689 Da    PI: 8.6449
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100231840041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.31.1e-071702032154
                                   HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                   k +yp++e++++L +k+gL+ +q+ +WF N+R +
  Ote100231840041|100231840041 170 KWPYPTEEDKAKLVEKTGLQLKQINNWFINQRKR 203
                                   469*****************************87 PP
2ELK262.1e-09124145122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELK +L++++++++ ++++E++
  Ote100231840041|100231840041 124 ELKIELKQGFKSRIEDVREEIL 145
                                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012561.4E-201873IPR005541KNOX2
PfamPF037919.8E-182272IPR005541KNOX2
PROSITE profilePS512139.132124144IPR005539ELK domain
PROSITE profilePS5007111.791144207IPR001356Homeobox domain
SMARTSM003896.4E-11146211IPR001356Homeobox domain
SuperFamilySSF466891.8E-16146210IPR009057Homeodomain-like
CDDcd000861.90E-10147208No hitNo description
Gene3DG3DSA:1.10.10.605.6E-25151209IPR009057Homeodomain-like
PfamPF059204.7E-18164203IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
QLSQSHHILR SYAQNQPHSF SHQQRQELDN FLTQYLLVLC SFREQLQQHV RLHAVGAVMA  60
CREIEQNLQS LTGATLGEGS GATMSEDEDE VCIDQCGGEE ELMGFGPLLP TESERSLMER  120
VRQELKIELK QGFKSRIEDV REEILRKRRA GKLPGDTTTV LKNWWQQHAK WPYPTEEDKA  180
KLVEKTGLQL KQINNWFINQ RKRNWHSNSH SATSLKSKRK R
Functional Description ? help Back to Top
Source Description
UniProtPossible developmental regulator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding; up to 7-fold increase.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072032.11e-141homeobox protein HD1
SwissprotP466061e-132HD1_BRANA; Homeobox protein HD1
TrEMBLA0A4D8Y4D61e-142A0A4D8Y4D6_SALSN; Uncharacterized protein
STRINGXP_008238758.11e-134(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67732329
Publications ? help Back to Top
  1. Boivin R,Hamel F,Beauseigle D,Bellemare G
    Stage-specific transcription of the homebox gene Bnhd1 in young tissues and flowers of Brassica napus.
    Biochim. Biophys. Acta, 1994. 1219(1): p. 201-4
    [PMID:7916213]