PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100233750021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 161aa    MW: 17575 Da    PI: 10.0276
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100233750021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.6e-3290147359
                                   -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh 
  Ote100233750021|100233750021  90 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPTMLIVTYEGEHNHA 147
                                   99************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.4E-174186IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.3E-3476147IPR003657WRKY domain
PROSITE profilePS5081131.05483149IPR003657WRKY domain
SuperFamilySSF1182908.5E-2885148IPR003657WRKY domain
SMARTSM007744.5E-3888148IPR003657WRKY domain
PfamPF031068.4E-2890146IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MSSLTGDTDS LQPSMSSGFQ ITNLSQVSSA GRPPLSTSSF KRKCSSMDDG NAKCGSGSSR  60
CHCPKKRKSR LKRVVRVPAI SMKMADIPPD DYSWRKYGQK PIKGSPHPRG YYKCSSVRGC  120
PARKHVERAL DDPTMLIVTY EGEHNHAISN SEAPALVLES S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-2276148273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074403.11e-111probable WRKY transcription factor 7
SwissprotQ9STX06e-69WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A0D5YA021e-108A0A0D5YA02_SALMI; WRKY protein
STRINGMigut.N02732.1.p1e-103(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479