PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100234360041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TALE
Protein Properties Length: 190aa    MW: 22275.2 Da    PI: 8.2484
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100234360041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.12.9e-081351682154
                                   HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                   k +yp++e++++L +++gL+ +q+ +WF N+R +
  Ote100234360041|100234360041 135 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 168
                                   469*****************************87 PP
2ELK29.41.8e-1089110122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELKh+L+++Y+++L+++++E++
  Ote100234360041|100234360041  89 ELKHELKNGYKEKLVDIREEIL 110
                                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012566.7E-11343IPR005541KNOX2
PfamPF037912.4E-10442IPR005541KNOX2
PfamPF037891.6E-689110IPR005539ELK domain
PROSITE profilePS512139.86589109IPR005539ELK domain
SMARTSM011880.00189110IPR005539ELK domain
PROSITE profilePS5007111.564109172IPR001356Homeobox domain
SuperFamilySSF466891.03E-16111177IPR009057Homeodomain-like
SMARTSM003894.7E-10111176IPR001356Homeobox domain
CDDcd000861.53E-10112173No hitNo description
Gene3DG3DSA:1.10.10.601.2E-24116174IPR009057Homeodomain-like
PfamPF059202.1E-18129168IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MQTNYVLLLC SFKEKLQQHV RIHAMEAVMG CWEIEQSLQS LTGVSPGEGT GATMSDDEDE  60
QEDSMMDMGL GPLIPTDSER SLMERVRQEL KHELKNGYKE KLVDIREEIL RKRRAGKLPG  120
DTTYVLKEWW HSHSKWPYPT EEDKARLVQE TGLQLKQINN WFINQRKRNW HAHANTNPSS  180
SQSKRKRRDR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345637.11e-111PREDICTED: homeobox protein knotted-1-like 3
RefseqXP_010519640.11e-111PREDICTED: homeobox protein knotted-1-like 3
SwissprotP480001e-109KNAT3_ARATH; Homeobox protein knotted-1-like 3
SwissprotP480011e-110KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLA0A0V0ID041e-110A0A0V0ID04_SOLCH; Putative homeobox protein knotted-1-like 3-like
TrEMBLA0A444YV651e-109A0A444YV65_ARAHY; Uncharacterized protein
TrEMBLA0A444YV931e-109A0A444YV93_ARAHY; Uncharacterized protein
TrEMBLM1B9S21e-110M1B9S2_SOLTU; Uncharacterized protein
TrEMBLM1B9S31e-110M1B9S3_SOLTU; Uncharacterized protein
STRINGXP_010519640.11e-111(Tarenaya hassleriana)
STRINGPGSC0003DMT4000403511e-110(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]