PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100234450131
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TALE
Protein Properties Length: 248aa    MW: 28266.2 Da    PI: 5.4046
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100234450131genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.94.5e-051912182855
                                   HHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  28 eereeLAkklgLterqVkvWFqNrRake 55 
                                   +e+  L++ ++L+++q+ +WF N+R ++
  Ote100234450131|100234450131 191 DEKNMLSEMTRLDQKQINNWFINQRKRH 218
                                   67889********************885 PP
2ELK28.24.3e-10164185122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   +LK++L+rKY+gy  +L++ ++
  Ote100234450131|100234450131 164 DLKEMLMRKYRGYVTNLRKDLL 185
                                   6*****************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.3E-212670IPR005540KNOX1
PfamPF037901.4E-212869IPR005540KNOX1
SMARTSM012563.2E-2171122IPR005541KNOX2
PfamPF037911.8E-2174121IPR005541KNOX2
SMARTSM01188130080100IPR005539ELK domain
SMARTSM011886.6E-4164185IPR005539ELK domain
PROSITE profilePS512139.533164184IPR005539ELK domain
PfamPF037891.0E-6164185IPR005539ELK domain
SMARTSM003890.0045170225IPR001356Homeobox domain
SuperFamilySSF466891.54E-8189231IPR009057Homeodomain-like
PfamPF059207.0E-9190217IPR008422Homeobox KN domain
CDDcd000864.03E-7190222No hitNo description
PROSITE profilePS500719.118190221IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-12190223IPR009057Homeodomain-like
PROSITE patternPS000270196219IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAAXXXXXXX XXXXHDHQQG LMEISNVIKA QIANHPLYPT LLSAYIDCRK VGAPPEMASI  60
LEEIGKENHT ISSEIGTDPE LDHFMKSYCD TLHKYKEELS KPFVEATNFL SSIGSQLTDL  120
CKQTLPPNEG PSIPRLVGNE PPRSGSDDGE VVEDSGSMEW GDQDLKEMLM RKYRGYVTNL  180
RKDLLKKRRK DEKNMLSEMT RLDQKQINNW FINQRKRHWR PSEDMRFALL EGVGATADAA  240
IYFDETSA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087493.18e-92homeobox protein knotted-1-like 1
SwissprotQ9FP291e-64KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A2G9GXR33e-89A0A2G9GXR3_9LAMI; Transcription factor MEIS1
STRINGGorai.007G306500.13e-82(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]