PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100234660041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 204aa    MW: 23582.6 Da    PI: 6.2548
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100234660041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.8e-121356148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g W +eEd +l+++v+ +G g+W+ +  + g    +k+c++rw +yl
  Ote100234660041|100234660041 13 KGFWKPEEDMILKKYVETHGEGNWTVVGLMRG----AKSCRLRWKNYL 56
                                  688***********************999999....9*********97 PP
2Myb_DNA-binding50.54.6e-1662107148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg ++++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Ote100234660041|100234660041  62 RGIMSQDEKDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 107
                                   67789*****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-17758IPR009057Homeodomain-like
PROSITE profilePS5129411.755856IPR017930Myb domain
SuperFamilySSF466891.09E-2610103IPR009057Homeodomain-like
SMARTSM007171.4E-101258IPR001005SANT/Myb domain
PfamPF002492.4E-101456IPR001005SANT/Myb domain
CDDcd001674.47E-91656No hitNo description
PROSITE profilePS5129422.70957111IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2259110IPR009057Homeodomain-like
SMARTSM007174.1E-1561109IPR001005SANT/Myb domain
PfamPF002493.9E-1463107IPR001005SANT/Myb domain
CDDcd001676.57E-1165107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MEGKEEKAAR VKKGFWKPEE DMILKKYVET HGEGNWTVVG LMRGAKSCRL RWKNYLRPNI  60
KRGIMSQDEK DLIIRLHKLL GNRWSLIAGR LPGRTDNEVK NYWNTHLNKR PSRAHMQQTP  120
EEEDNLETAT TAAKVEAAPP QGENTDISTS GADSWIENLN NGDYFGYGMN MHLESEYEAM  180
PFLDDFIYSA SMEETMFHFC SFIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-22131107107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020549563.11e-71transcription factor MYB82
SwissprotQ9LTF71e-62MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A059PRN78e-78A0A059PRN7_SALMI; MYB-related transcription factor
STRINGSolyc07g008010.2.14e-66(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154