PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100235340031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NF-YA

Protein Properties

Length: 183aa MW: 19921.6 Da PI: 9.2365

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100235340031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	42	3e-13	141	173	3	36
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 p++VNaKQy++I++RR+kRak++ +++ k rk Ote100235340031\|100235340031 141 PIFVNAKQYNGIMRRRKKRAKADLHNNF-LKIRK 173 9**********************99886.55555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51152	14.966	138	183	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.6E-10	141	173	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MTLHTVFCKE NEGGAQNPIH GGAAQWSGLG CQAVYGGEGF VQSAAAKDVH GKPNSNTTHF 60 NLFSGDCKSG ENGKSPLLPA SCVPAANVDY RGHLELGFGQ SLICGKYPYP DQCYGVYSSY 120 GSPQFPGRMM LPLRLSSDGG PIFVNAKQYN GIMRRRKKRA KADLHNNFLK IRKVTENHLH 180 CMQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094246.1	2e-63	nuclear transcription factor Y subunit A-10
Refseq	XP_020553756.1	2e-63	nuclear transcription factor Y subunit A-10
Refseq	XP_020553757.1	2e-63	nuclear transcription factor Y subunit A-10
TrEMBL	A0A2Z4K5F5	6e-61	A0A2Z4K5F5_TECGR; NF-Y2 protein
STRING	Migut.J00688.1.p	1e-56	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3706	23	47