PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100236190001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

Protein Properties

Length: 216aa MW: 24965.6 Da PI: 10.9501

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100236190001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.1	6.1e-22	39	106	29	96
-..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+++ e++l++ + Ote100236190001\|100236190001 39 QLSKGILLNFEDMNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVGFQRSTGPEKQLYIDW 106 3347889************************************************8766777677766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	5.1E-4	11	110	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.83E-19	39	106	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.3E-24	39	112	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.57E-16	40	95	No hit	No description
Pfam	PF02362	8.4E-19	41	107	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.533	46	110	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MLRKHTYNDE LEQSRRGRGG RIPARGGAAA DTAERSREQL SKGILLNFED MNGKVWRFRY 60 SYWNSSQSYV LTKGWSRFVK EKNLRAGDVV GFQRSTGPEK QLYIDWKARN SGTNGVEAVR 120 SLPVQMVRLF GVNIAPSNAV AGCGGKRMRG MEMMGLNCSK KQRIIDXXXX XXXXXXXXXX 180 XXXXXXVECW RKRREGGVRW RRCKLQKLEL YSYDLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wid_A	1e-36	42	110	50	118	DNA-binding protein RAV1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269\|PubMed:18718758, ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070834.1	8e-69	AP2/ERF and B3 domain-containing transcription factor RAV1-like
Swissprot	P82280	8e-53	RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBL	A0A2G9GW46	2e-72	A0A2G9GW46_9LAMI; Uncharacterized protein
STRING	cassava4.1_010157m	1e-64	(Manihot esculenta)

Publications ? help Back to Top
Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S RAV genes: regulation of floral induction and beyond. Ann. Bot., 2014. 114(7): p. 1459-70 [PMID:24812253] Marín-González E, et al. SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures. Plant Physiol., 2015. 169(2): p. 1214-24 [PMID:26243615] Sun YW, et al. Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus. Sci Rep, 2015. 5: p. 16476 [PMID:26602265] Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering. Plant Sci., 2015. 241: p. 78-95 [PMID:26706061] Matías-Hernández L, et al. TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation. Plant Physiol., 2016. 170(3): p. 1624-39 [PMID:26802039] Li P, et al. The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses. Physiol Plant, 2017. 159(4): p. 416-432 [PMID:27747895]