PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100236290031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

Trihelix

Protein Properties

Length: 235aa MW: 27244.4 Da PI: 9.7076

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100236290031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.6	6e-22	2	95	7	86
trihelix 7 vlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tses 75 v++Li ++ ++++++++++ +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++++ +k+ ++++ Ote100236290031\|100236290031 2 VRLLIMVVFYIGDEVGSDAgdptakkkgggllQKKGKWKSVSRAMMERGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtSCRV 84 66677777777777776544555666777777********************************************669 PP trihelix 76 sstcpyfdqle 86 +++ ++++ ++ Ote100236290031\|100236290031 85 VENQSLLETMD 95 *****999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.2E-18	22	120	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MVRLLIMVVF YIGDEVGSDA GDPTAKKKGG GLLQKKGKWK SVSRAMMERG FYVSPQQCED 60 KFNDLNKRYK RVNDILGKGT SCRVVENQSL LETMDLTPKM KEEVKKLLNS KHLFFREMCA 120 YHNSCGHSPA AAPPPPPERC LHSEEKAAVI PNQERRVGIQ TAALEVEKQR VKWEKYRRKK 180 EREMERERLV NERMRLECER MVLMVRQKEV ELMDHYQQQQ QNSCNNRGDP SSVTG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022572026.1	1e-85	trihelix transcription factor GT-3a-like
TrEMBL	A0A2H5MZ73	5e-95	A0A2H5MZ73_CITUN; Uncharacterized protein
STRING	cassava4.1_007978m	4e-99	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6710	22	31