PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100236290081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 173aa    MW: 18522.4 Da    PI: 8.6733
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100236290081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.3e-05146169123
                                   EEETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                   y+C+ C+k+F +   L++H +  H
  Ote100236290081|100236290081 146 YSCKSCSKTFGSEKALESHSKAkH 169
                                   99*****************98777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0083146169IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.549146173IPR007087Zinc finger, C2H2
PfamPF139129.4E-6146170IPR007087Zinc finger, C2H2
PROSITE patternPS000280148169IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MEPSTFTDTG LVTHESESDE ELPLMTANNA KPEPKEKSAK PAETAKANAA KGKESDAGKQ  60
KDEDDSDEES GESDEETPKK VEPSKKRVAE SASKTPVQDK KAKVTPQKTD GKKVSGHVAT  120
PYPAKQVGKT PANKPNQQIH QLGGSYSCKS CSKTFGSEKA LESHSKAKHS SKK
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101488.14e-55histone deacetylase HDT1
SwissprotQ6V9I66e-33HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA0A4D8YXN02e-62A0A4D8YXN0_SALSN; Uncharacterized protein
STRINGMigut.J00993.1.p3e-42(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31761823
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]