PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100236540041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

GRAS

Protein Properties

Length: 84aa MW: 9593.6 Da PI: 4.4464

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100236540041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	46.5	6.2e-15	4	83	302	374
GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve......eesgslvlgWkdrpLvsvSaWr 374 ++ er+e+ ++W+erl+ aG+++v++s+++ +++k+ll+++ ++ +v +++ ++l Wk++++v++S+W+ Ote100236540041\|100236540041 4 NSGDSERREKGRQWSERLRGAGLSAVAYSDDVLDDVKALLKRYRaGWSLMVGdkeeesDDQSGIYLAWKEEAVVWASVWK 83 455679************************************666566655554433366777************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	9.668	1	56	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.1E-12	4	83	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 84 aa Download sequence Send to blast
MEENSGDSER REKGRQWSER LRGAGLSAVA YSDDVLDDVK ALLKRYRAGW SLMVGDKEEE 60 SDDQSGIYLA WKEEAVVWAS VWKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_B	2e-21	3	84	398	474	Protein SHORT-ROOT
5b3h_B	2e-21	3	84	344	420	Protein SHORT-ROOT
5b3h_E	2e-21	3	84	344	420	Protein SHORT-ROOT
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification (By similarity). {ECO:0000250}.
UniProt	Transcription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269\|PubMed:17446396}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073835.1	5e-32	protein SHORT-ROOT
Swissprot	A2YN56	4e-21	SHR1_ORYSI; Protein SHORT-ROOT 1
Swissprot	Q8H2X8	3e-21	SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBL	A0A059DBW7	2e-30	A0A059DBW7_EUCGR; Uncharacterized protein
STRING	XP_010047409.1	3e-31	(Eucalyptus grandis)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]