PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100236740011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family M-type_MADS
Protein Properties Length: 126aa    MW: 13533.8 Da    PI: 10.0758
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100236740011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.52.6e-211765149
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                  k+ie ks  qvtfskRr g++ KA+ELS+LC+a++a+++ s+ +k+y +
  Ote100236740011|100236740011 17 KKIEKKSTLQVTFSKRRGGLFRKASELSILCGAQIAILVQSPADKMYAF 65
                                  68*********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-29968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.133969IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-251082IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-191131IPR002100Transcription factor, MADS-box
PfamPF003191.6E-221865IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-193146IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-194667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009658Biological Processchloroplast organization
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
METSKKKTLG RRKIEIKKIE KKSTLQVTFS KRRGGLFRKA SELSILCGAQ IAILVQSPAD  60
KMYAFGHPSV GALIDNSPAI TPQGGNDGRM KYEKAAXXXX XXXXXXXGEE IDGGEGGEGF  120
LVGGGD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that controls female gametophyte (megagametogenesis) development and chloroplast biogenesis during embryo development. {ECO:0000269|PubMed:18346189}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012853655.17e-31PREDICTED: agamous-like MADS-box protein AGL61
SwissprotO808074e-26AGL23_ARATH; Agamous-like MADS-box protein AGL23
TrEMBLA0A4D8XV388e-35A0A4D8XV38_SALSN; Uncharacterized protein
STRINGMigut.H00739.1.p6e-35(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13821415
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]