PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100237470121

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HRT-like

Protein Properties

Length: 408aa MW: 45806.5 Da PI: 9.9121

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100237470121	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	55.9	7.2e-18	264	294	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv++++GsvC++ Pv gRKRC+ HKG+R+ Ote100237470121\|100237470121 264 ICGVAIGNGSVCTTAPVAGRKRCAMHKGQRV 294 8*****************************7 PP
2	HRT-like	47.7	2.5e-15	355	385	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG+iled s Ck+ P++g+KRC eHKG+Ri Ote100237470121\|100237470121 355 ICGFILEDDSSCKNRPIRGNKRCVEHKGRRI 385 8*****************************7 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MGVRSTGSDA TTIRLKREDF RRTKHDSAFS QWKILIGASD WEDYSMGKEG AERYRTQNLP 60 NGTSCPGVYE LGIATSRPQS GRETRKLDSS YVIPVYLGQS DNLRNRMQQY GRDGDHLENG 120 CTSSKISSYQ SASSAKGPGL FTDIFSRGLP IVYRCAPMSS KQDAEVTEKK LLDKFDYAWN 180 KDSNGPRRQD DIHKKLERLE KASKISLLAK KFLLSNHREV GIRIRTGSNM SEMDNSTIFS 240 RILGVRRVQA RPVQDGYGDS GNNICGVAIG NGSVCTTAPV AGRKRCAMHK GQRVNGYISK 300 SNTEGKAPSI AARLASGVET NQIQEFSGFH DQKWSYIREN HRPCDHTPDK EFDLICGFIL 360 EDDSSCKNRP IRGNKRCVEH KGRRIRRSNP SLQGKNPDEF MYAQILQM

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MGVRSTGSDA TTIRLKREDF RRTKHDSAFS QWKILIGASD WEDYSMGKEG AERYRTQNLP  60
NGTSCPGVYE LGIATSRPQS GRETRKLDSS YVIPVYLGQS DNLRNRMQQY GRDGDHLENG  120
CTSSKISSYQ SASSAKGPGL FTDIFSRGLP IVYRCAPMSS KQDAEVTEKK LLDKFDYAWN  180
KDSNGPRRQD DIHKKLERLE KASKISLLAK KFLLSNHREV GIRIRTGSNM SEMDNSTIFS  240
RILGVRRVQA RPVQDGYGDS GNNICGVAIG NGSVCTTAPV AGRKRCAMHK GQRVNGYISK  300
SNTEGKAPSI AARLASGVET NQIQEFSGFH DQKWSYIREN HRPCDHTPDK EFDLICGFIL  360
EDDSSCKNRP IRGNKRCVEH KGRRIRRSNP SLQGKNPDEF MYAQILQM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093698.1	1e-177	protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A4D8Z860	0.0	A0A4D8Z860_SALSN; Uncharacterized protein
STRING	Migut.J00591.1.p	1e-147	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7741	23	30