PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100237480041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 253aa    MW: 29762.5 Da    PI: 5.2128
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100237480041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-16855148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT++Ed +lv +vk++G ++W+ Ia+  g++R++k+c++rw +yl
  Ote100237480041|100237480041  8 KGPWTEQEDVQLVFYVKLFGDRRWDFIAKVSGLNRSGKSCRLRWVNYL 55
                                  79********************************************97 PP
2Myb_DNA-binding51.71.9e-1661105147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   r+++T+ E+ l+v++  ++G++ W++Iar+++ gRt++++k++w+++
  Ote100237480041|100237480041  61 RDKMTPHEERLIVELQSKWGNR-WSRIARKLP-GRTDNEIKNYWRTH 105
                                   7899******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.079359IPR017930Myb domain
SuperFamilySSF466893.56E-296102IPR009057Homeodomain-like
SMARTSM007175.2E-14757IPR001005SANT/Myb domain
PfamPF002496.5E-15855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-20962IPR009057Homeodomain-like
CDDcd001671.55E-91055No hitNo description
SMARTSM007171.3E-1460108IPR001005SANT/Myb domain
PROSITE profilePS5129417.77560110IPR017930Myb domain
PfamPF002491.3E-1361105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2063106IPR009057Homeodomain-like
CDDcd001678.59E-1163105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEREEVRKGP WTEQEDVQLV FYVKLFGDRR WDFIAKVSGL NRSGKSCRLR WVNYLHPGLK  60
RDKMTPHEER LIVELQSKWG NRWSRIARKL PGRTDNEIKN YWRTHXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXV EEERSFYDTG GVDDSTANAT TNGEKKSGLG LEVEEGSKVY  180
SMDDIWKEFE FPEGLTSPTV VSPTWDDCCT TDSLWCMNIE EESKMLXXXX XXXXXXISDH  240
HFQTFPFCNY MIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-25510424122MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552227.12e-84transcription factor MYB48 isoform X3
SwissprotQ9LX827e-65MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A059PRS83e-94A0A059PRS8_SALMI; MYB-related transcription factor
STRINGXP_009358321.16e-72(Pyrus x bretschneideri)
STRINGXP_002531120.15e-72(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]