PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100237610011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 187aa    MW: 21081.9 Da    PI: 10.6373
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100237610011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1171.2e-36231142102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k++++++d+++++lisw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+
  Ote100237610011|100237610011  23 FLTKTFQLVDDPSVDDLISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFA 94 
                                   9*****************************************************************99.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   ++ F++g+k ll++i+r+k 
  Ote100237610011|100237610011  95 NDCFRRGQKPLLKEIQRRKI 114
                                   *****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.0E-3915107IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.1E-6019112IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.13E-3619112IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-3223112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-212346IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-217486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MVSGDGTGGG SGGESQRSAP TPFLTKTFQL VDDPSVDDLI SWNEDGTTFI VWRPAEFARD  60
LLPKYFKHNN FSSFVRQLNT YGFRKVVPDR WEFANDCFRR GQKPLLKEIQ RRKISAGNNT  120
TVNAQSVTTA VPAAVAIQIS PSNSXXXXXX XTSKSSRPTH PPPQPPQPLR RCDDAHRRRK  180
YWKKTTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-28711216129Heat shock factor protein 1
5d5v_B2e-28711216129Heat shock factor protein 1
5d5v_D2e-28711216129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021809833.14e-74heat stress transcription factor B-2b
RefseqXP_021809834.14e-74heat stress transcription factor B-2b
RefseqXP_021809835.14e-74heat stress transcription factor B-2b
SwissprotQ9T0D39e-62HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A2Z7C2341e-70A0A2Z7C234_9LAMI; Heat stress transcription factor B-2b
STRINGMigut.A00803.1.p2e-71(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]