PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100237740061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 223aa    MW: 25955.2 Da    PI: 4.831
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100237740061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.33.6e-2062114456
                                   -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   ++++++eq++ Le+ F  ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Ote100237740061|100237740061  62 KRKLSDEQVKMLEQSFGDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWK 114
                                   45899***********************************************9 PP
2HD-ZIP_I/II121.83.5e-3961152293
                   HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 
                                   +kr+ls+eqvk+LE+sF  e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+ +d+ + +++rLe+
  Ote100237740061|100237740061  61 RKRKLSDEQVKMLEQSFGDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSDHDTAVVHKCRLET 141
                                   8******************************************************************************** PP

                   HD-ZIP_I/II  83 eveeLreelke 93 
                                   e  +L+e+l+e
  Ote100237740061|100237740061 142 ELLKLKEQLHE 152
                                   ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.49156116IPR001356Homeobox domain
SMARTSM003894.6E-2059120IPR001356Homeobox domain
CDDcd000862.21E-1761117No hitNo description
SuperFamilySSF466892.44E-1862126IPR009057Homeodomain-like
PfamPF000462.4E-1762114IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.2E-2163123IPR009057Homeodomain-like
PRINTSPR000316.2E-68796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000316.2E-696112IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MNPEVDEQMA LISEYYPDGI YSQFVPEQDA CIITGXXXXX XXXXXXXXXX XXXXXXXXXM  60
RKRKLSDEQV KMLEQSFGDE HKLESERKDK LAAELGLDPR QVAVWFQNRR ARWKSKKLEE  120
EYSKLKSDHD TAVVHKCRLE TELLKLKEQL HEAEKEIQRL SDGFSSNSPC SSFSMEVGMD  180
PQPHITPFLG EYGMDGLERV VYASDHNGAY ARGMEWDNNL YYL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099589.23e-84homeobox-leucine zipper protein ATHB-40
SwissprotQ9ZU701e-59ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A4D9A5N94e-80A0A4D9A5N9_SALSN; Homeobox-leucine zipper protein
STRINGSolyc02g085630.2.14e-80(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]