PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100238290051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

M-type_MADS

Protein Properties

Length: 235aa MW: 26455.9 Da PI: 6.6328

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100238290051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.2	7.9e-27	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g+ Ote100238290051\|100238290051 9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGR 53 68*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.8E-35	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.84E-27	1	71	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	28.833	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	8.62E-35	2	53	No hit	No description
PRINTS	PR00404	4.2E-25	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-25	10	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-25	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRYLERALG 60 KLKSEADRSY NQVSTSPASM IHSQIEHVLQ DQHNSPGAQT SQVISYPSQN TDMNVLATRN 120 AESVLDWLPQ RDPQAQILNF LDSNGLLPMR DQPQRMDNIL PQSLTLVHAP SVHVYNHLSP 180 SRSMEDDVKF DVNLSPWAEL YPTGNDPFPT PQPREGALLE LFLSQLAPVN QDHIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	4e-17	1	58	1	58	MEF2 CHIMERA
6byy_B	4e-17	1	58	1	58	MEF2 CHIMERA
6byy_C	4e-17	1	58	1	58	MEF2 CHIMERA
6byy_D	4e-17	1	58	1	58	MEF2 CHIMERA
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011069761.1	1e-120	agamous-like MADS-box protein AGL104 isoform X1
TrEMBL	A0A4D9A4Q2	1e-127	A0A4D9A4Q2_SALSN; Uncharacterized protein
STRING	Migut.C00517.1.p	1e-115	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6183	19	25