PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100238740001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 154aa    MW: 17559.8 Da    PI: 6.1034
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100238740001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS22.31.4e-07115169109
                          GRAS  69 tseknsseelaalklfsevsPilkfshltaNqaIleavege 109
                                    s +n++ ++  l  f++++P+++f++ +aN a+leaveg 
  Ote100238740001|100238740001  11 LSLNNHKFSIIELACFVDLTPWHRFGFTAANAAVLEAVEGY 51 
                                   445567777777788***********************996 PP
2GRAS87.71.9e-2754153230330
                          GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhe 310
                                   ++++l+P+++v+v+++ad +s++++ r+ +a +y +  +d++++ lpres++r+++E+  + ++i+nv+a+eg +r+er e
  Ote100238740001|100238740001  54 ALRGLNPRLMVLVDEDADFTSNNLVSRLRSAYNYLWIPYDTVDTFLPRESSQRQWYEAD-ICWKIENVIAHEGPQRVERVE 133
                                   589********************************************************.********************* PP

                          GRAS 311 tlekWrerleeaGFkpvpls 330
                                    ++kW +r+++aGF+ v +s
  Ote100238740001|100238740001 134 PKGKWVQRMRNAGFRGVGFS 153
                                   ****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098514.7181154IPR005202Transcription factor GRAS
PfamPF035145.0E-51151IPR005202Transcription factor GRAS
PfamPF035146.4E-2554153IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
SAVANVHAND LSLNNHKFSI IELACFVDLT PWHRFGFTAA NAAVLEAVEG YSVALRGLNP  60
RLMVLVDEDA DFTSNNLVSR LRSAYNYLWI PYDTVDTFLP RESSQRQWYE ADICWKIENV  120
IAHEGPQRVE RVEPKGKWVQ RMRNAGFRGV GFSD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022843761.11e-59scarecrow-like protein 32
SwissprotQ9SN221e-37SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A4D9BAT44e-56A0A4D9BAT4_SALSN; Uncharacterized protein
STRINGVIT_07s0129g00340.t013e-56(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87812429