PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100238960041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 292aa    MW: 32340.6 Da    PI: 8.0567
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100238960041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.11e-05326226
                                  -S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                                  k++lC+ffa  G C  G+ C ++H+
  Ote100238960041|100238960041  3 KRVLCKFFAH-GACLKGEHCEYSHD 26
                                  99****6666.*************5 PP
2zf-CCCH26.11.5e-083453525
                                  --SGGGGTS--TTTTT-SS-S CS
                       zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                                  +C f+++ G C yG+rC++ H
  Ote100238960041|100238960041 34 ICTFYQK-GVCAYGPRCRYDH 53
                                  7******.************* PP
3zf-CCCH24.45e-08137159326
                                   S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                   +++C+ fa+ G+C++G++C++ Hg
  Ote100238960041|100238960041 137 QPICS-FAAAGECPHGANCPRVHG 159
                                   68899.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.615128IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1262956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00123055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-43453IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-63453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.765134161IPR000571Zinc finger, CCCH-type
SMARTSM003560.0063135160IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-5137159IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.78E-13191267No hitNo description
Gene3DG3DSA:3.30.40.104.1E-10198262IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.0017202262No hitNo description
PROSITE profilePS5008912.238203261IPR001841Zinc finger, RING-type
SMARTSM001844.6E-7203260IPR001841Zinc finger, RING-type
PfamPF000979.5E-7203260IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180227236IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEH CEYSHDWKAP PNNICTFYQK GVCAYGPRCR YDHIKVSRLQ  60
SPTLSSSADL SSPKELSSGA AILNSGVATG ITVEHSGSNL PVPPLGRTAW GENSGHCDAR  120
RHDDDLVEIR GVDPADQPIC SFAAAGECPH GANCPRVHGD LCPTCRKHCL HPFRPQEREE  180
HMQTCEKRQK HLEALTHSQE IECSVCLERV LSKSTAAECK FGILSECDHP FCVSCIRNWR  240
STSRASGTDA NSALRSCPIC RKLSYYVIPS VIWYSSKXXX XXWKLLKVTC PS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844691.11e-145PREDICTED: E3 ubiquitin-protein ligase makorin, partial
SwissprotE0X9N41e-108C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A4D8Y9T11e-154A0A4D8Y9T1_SALSN; E3 ubiquitin-protein ligase makorin
STRINGMigut.N01471.1.p1e-143(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]