PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100240310071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 221aa    MW: 25767.7 Da    PI: 6.8013
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100240310071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.31.4e-30959151
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  krien+snrqvt+skRrngi+KKA+E+SvLCda+v+v+if+s+gk++e++s
  Ote100240310071|100240310071  9 KRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAQVSVVIFASSGKMHEFCS 59
                                  79***********************************************96 PP
2K-box68.22.7e-2371172198
                         K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqR.hllGedLesLslkeLqqLeqqLekslkkiRskKne...llleqi 77 
                                   y+k sgk+l++ak+e+l++e++++kke++++q e+R hl+Ged+++Ls+keL+ Le++Le+++++ ++k++e   ++++++
  Ote100240310071|100240310071  71 YHKLSGKRLWDAKHEHLDNEINRIKKENDSMQIELRlHLKGEDISTLSHKELMVLEEALENGITTLKAKQMEfvrMMKKHV 151
                                   7899****************************87776**********************************8444578889 PP

                         K-box  78 eelqkkekelqeenkaLrkkl 98 
                                    +     ++++een++L  kl
  Ote100240310071|100240310071 152 TTIPADSEMMEEENQNLLFKL 172
                                   9999999********998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.394161IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-41160IPR002100Transcription factor, MADS-box
CDDcd002655.91E-43280No hitNo description
SuperFamilySSF554551.23E-36296IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.8E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-283859IPR002100Transcription factor, MADS-box
PfamPF014863.7E-1383172IPR002487Transcription factor, K-box
PROSITE profilePS5129712.11584178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRNGIMK KAKEISVLCD AQVSVVIFAS SGKMHEFCSP  60
STTLVDMLDQ YHKLSGKRLW DAKHEHLDNE INRIKKENDS MQIELRLHLK GEDISTLSHK  120
ELMVLEEALE NGITTLKAKQ MEFVRMMKKH VTTIPADSEM MEEENQNLLF KLRQMHLDPM  180
EENVMEAQGV YDHQTVADYE AQQMPFAFRV QPMQPNLQER F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-16160160MEF2 CHIMERA
6byy_B2e-16160160MEF2 CHIMERA
6byy_C2e-16160160MEF2 CHIMERA
6byy_D2e-16160160MEF2 CHIMERA
6bz1_A1e-16160160MEF2 CHIMERA
6bz1_B1e-16160160MEF2 CHIMERA
6bz1_C1e-16160160MEF2 CHIMERA
6bz1_D1e-16160160MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081947.11e-144floral homeotic protein GLOBOSA
SwissprotQ033781e-135GLOB_ANTMA; Floral homeotic protein GLOBOSA
TrEMBLA0A4D9AG251e-142A0A4D9AG25_SALSN; MADS-box transcription factor, plant
STRINGMigut.A00326.1.p1e-141(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46802139
Publications ? help Back to Top
  1. Tröbner W, et al.
    GLOBOSA: a homeotic gene which interacts with DEFICIENS in the control of Antirrhinum floral organogenesis.
    EMBO J., 1992. 11(13): p. 4693-704
    [PMID:1361166]
  2. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  3. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]