PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100240360101

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 136aa MW: 15240.5 Da PI: 8.3324

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100240360101	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	114.5	6.9e-36	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+C++dC+++p fp+++p +fa vhk++Ga nv kll++lp + r +a+++l+yeA +r++dPvyG++g i+ Ote100240360101\|100240360101 8 RCAACKHLRRRCPSDCIFSPFFPSDNPLRFASVHKIYGACNVAKLLQDLPAKWRAQAADTLCYEAYCRIKDPVYGCAGSIT 88 6****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 l++ql+ ++ +la+l+++ Ote100240360101\|100240360101 89 VLHHQLNAAEFQLATLEAQ 107 ***********999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.791	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.2E-36	8	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MHGMDSSRCA ACKHLRRRCP SDCIFSPFFP SDNPLRFASV HKIYGACNVA KLLQDLPAKW 60 RAQAADTLCY EAYCRIKDPV YGCAGSITVL HHQLNAAEFQ LATLEAQLQA IKNESNTVKL 120 NQHHQPTSCY TLPTLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-32	9	108	12	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-32	9	108	12	111	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098999.1	2e-52	LOB domain-containing protein 23-like
Swissprot	P59467	6e-42	LBD23_ARATH; LOB domain-containing protein 23
TrEMBL	A0A4D9AY56	6e-53	A0A4D9AY56_SALSN; Uncharacterized protein
STRING	evm.model.supercontig_1.339	3e-48	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5277	20	39