PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100240800031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family M-type_MADS
Protein Properties Length: 83aa    MW: 9442.25 Da    PI: 10.4754
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100240800031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.21.8e-0725551949
                                  HHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                        SRF-TF 19 gilKKAeELSvLCdaevaviifsstgklyey 49
                                  g+ KK + L +LC++e+++ii +++++   +
  Ote100240800031|100240800031 25 GLRKKLHQLTTLCAVEACMIINGPQNQNSVW 55
                                  899*********************9986666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.082145IPR002100Transcription factor, MADS-box
SMARTSM004320.0017157IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-12271IPR002100Transcription factor, MADS-box
PfamPF003197.8E-62351IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MGRAKLKMQL IEKEKSRMQX XXSDGLRKKL HQLTTLCAVE ACMIINGPQN QNSVWPHDNP  60
DQVGRMIAAY KSRSRELGGV KTY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092692.17e-19agamous-like MADS-box protein AGL82
TrEMBLA0A4D8ZJF72e-19A0A4D8ZJF7_SALSN; Uncharacterized protein
STRINGMigut.B00770.1.p5e-16(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253