PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100240880091

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

C2H2

Protein Properties

Length: 166aa MW: 18509.1 Da PI: 10.6063

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100240880091	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	128	150	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + Ote100240880091\|100240880091 128 WKCDKCSKRYAVQSDWKAHSKIC 150 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.57E-5	115	149	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.4E-5	116	149	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MLQGVDENSL SNLTSAISNE ASITSSSNVN EMRGTTPQQQ QLRYNPTLQQ PPPKKRRNLP 60 GNPGTSIPSP LGHNLPWKLK QRNKQEVVRK KVYVCPEPSC VHHDSARALG DLTGIKKHFS 120 RKHGEKKWKC DKCSKRYAVQ SDWKAHSKIC GTRGTVSSPT EPSVMP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	9e-13	124	153	3	32	Zinc finger protein JACKDAW
5b3h_F	9e-13	124	153	3	32	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011081677.1	4e-67	protein indeterminate-domain 7 isoform X1
Swissprot	Q8H1F5	8e-50	IDD7_ARATH; Protein indeterminate-domain 7
Swissprot	Q9LRW7	1e-49	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	A0A4D9AID0	6e-68	A0A4D9AID0_SALSN; Uncharacterized protein
STRING	Migut.A00127.1.p	1e-64	(Erythranthe guttata)

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]