PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100240980011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family LFY
Protein Properties Length: 98aa    MW: 11046.4 Da    PI: 8.0154
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100240980011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY169.53.1e-52184302385
                       FLO_LFY 302 mrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChler 382
                                   mrhYvhCYalhcLde as+alrra+ker+e +G+wrqacy+plvaiaa+qgwdi+a+f++hprLs+WYvP kLrqLCh++r
  Ote100240980011|100240980011   1 MRHYVHCYALHCLDEPASDALRRAYKERNESIGSWRQACYEPLVAIAATQGWDIEAIFSHHPRLSVWYVPSKLRQLCHANR 81 
                                   9*******************************************************************************9 PP

                       FLO_LFY 383 ska 385
                                    ++
  Ote100240980011|100240980011  82 ISS 84 
                                   876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.2E-49184IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MRHYVHCYAL HCLDEPASDA LRRAYKERNE SIGSWRQACY EPLVAIAATQ GWDIEAIFSH  60
HPRLSVWYVP SKLRQLCHAN RISSASTSAT TGGGEAHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A7e-4519480173PROTEIN LEAFY
2vy2_A7e-4519480173PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for flower development. FLO may interact in a sequential manner with other homeotic genes affecting floral organ identity.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280945.11e-48floricaula/leafy homolog
RefseqXP_023873133.12e-49protein UNIFOLIATA-like, partial
SwissprotP239155e-47FLO_ANTMA; Floricaula protein
TrEMBLW8VNP38e-48W8VNP3_PYRPY; LEAFY protein
STRINGXP_008392692.15e-48(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66682333
Publications ? help Back to Top
  1. Coen ES, et al.
    floricaula: a homeotic gene required for flower development in antirrhinum majus.
    Cell, 1990. 63(6): p. 1311-22
    [PMID:1702033]