PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100241360021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 158aa MW: 17798.5 Da PI: 7.3906

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100241360021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138	3.3e-43	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasnv+k+l++l+ ++r da+ slvyeA+ar+rdPvyG+vg i+ Ote100241360021\|100241360021 8 PCASCKLLRRRCAKDCIFAPYFPPDDPQKFAIVHKVFGASNVSKMLQELHVDQRGDAVCSLVYEANARMRDPVYGCVGAIS 88 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 lq+q++ql+ +la++++e Ote100241360021\|100241360021 89 YLQNQVSQLQMQLAMAEAE 107 ************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.19	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.7E-43	8	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MGGGGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPQKFAIV HKVFGASNVS KMLQELHVDQ 60 RGDAVCSLVY EANARMRDPV YGCVGAISYL QNQVSQLQMQ LAMAEAEILC IQMQQEQQHQ 120 PLMPNQDHHK SILLATNNFT NLQNYVMQDP LKRESLWI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-47	4	109	7	112	LOB family transfactor Ramosa2.1
5ly0_B	7e-47	4	109	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011080777.1	9e-90	LOB domain-containing protein 12
Swissprot	Q8LBW3	7e-75	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2G9I6Q4	4e-87	A0A2G9I6Q4_9LAMI; Uncharacterized protein
STRING	VIT_06s0004g07200.t01	4e-84	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]