PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100243530121
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NF-YB
Protein Properties Length: 202aa    MW: 22191 Da    PI: 5.7544
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100243530121genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB85.27.6e-272472149
                         NF-YB  1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse 49
                                  +reqdrflPian++rimkk+lPan+ki+kdak+tvqecvsefisfvtse
  Ote100243530121|100243530121 24 MREQDRFLPIANIGRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSE 72
                                  59*********************************************99 PP
2NF-YB73.82.6e-231111574995
                         NF-YB  49 easdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                                    asdkcq+ekrktingddllwa+atlGfe+y++plk+yl++yre ++
  Ote100243530121|100243530121 111 GASDKCQKEKRKTINGDDLLWAMATLGFEEYINPLKTYLARYREGDT 157
                                   69*****************************************9665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.59E-161872IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.1E-241972IPR009072Histone-fold
PfamPF008082.0E-163072IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.9E-175876No hitNo description
SuperFamilySSF471131.68E-15107160IPR009072Histone-fold
PfamPF008089.7E-5109133IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.0E-20111182IPR009072Histone-fold
PRINTSPR006154.9E-17116134No hitNo description
PRINTSPR006154.9E-17135153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MADSPGGHGS HENGGGDQSP RSSMREQDRF LPIANIGRIM KKALPANGKI AKDAKDTVQE  60
CVSEFISFVT SEYICKELIA YILYTSAMYL LDWLRVGILY SKILPFHFYQ GASDKCQKEK  120
RKTINGDDLL WAMATLGFEE YINPLKTYLA RYREGDTKGS VRGADGAAKK DTAGTQLGPD  180
AQSAFDDESD FSGALASCST YL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B4e-3823154294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A4e-3823154294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077038.14e-74nuclear transcription factor Y subunit B-1
RefseqXP_020548913.14e-74nuclear transcription factor Y subunit B-1
SwissprotQ8VYK42e-64NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A0N6X6V54e-79A0A0N6X6V5_SALMI; Transcription factor NFYB
STRINGVIT_13s0019g03600.t016e-72(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]