PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100244210031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 501aa    MW: 57279.6 Da    PI: 5.6943
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100244210031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS176.91.5e-541244865374
                          GRAS   5 LlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalkl 83 
                                   L+++ + +s+++  ++++lL +     s dg p++ + +++ + L++r+   + ++ +  +  e  + +   ++  +a++ 
  Ote100244210031|100244210031 124 LIDASQKFSKQQYDEVEELLMH-ALSGSLDGHPIETVLTFYGRHLRERIDV-QRGMIDLEREVEHVDVDqaIIDLKTAVRE 202
                                   6667777777777777777765.34579999******************97.55555544333333222247888888888 PP

                          GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetge 163
                                     +  P+ ++sh+t  q+Il+ ve++er+H +Df+ + G  W+  ++aLa R+     +l+i +v s              
  Ote100244210031|100244210031 203 CEQKHPFSQISHFTGIQTILDNVESAERIHFVDFGQKIGSYWILVIDALARREhCHVKQLKISAVCS----XXXXXXXXXX 279
                                   ****************************************************955677*********....8888889999 PP

                          GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveq 244
                                         e++++pf f++l  ++  +le  +L+++ g+a++V + + l   l+ +   es    +L+ +k+++P+v+vvv+ 
  Ote100244210031|100244210031 280 XXXXXXESMNLPFVFKIL-YSEKGMLENIDLELEAGDAVVVYMEFFLVASLACPRRAES----FLRGLKHINPRVIVVVDV 355
                                   9999*************6.66778888899***************99999966666666....****************** PP

                          GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                                   ead+ +++F ++f +al   sa+fd l++ l+++se ++ vE+  +++ i+n v  e ++ + +h++   Wre ++++G  
  Ote100244210031|100244210031 356 EADLKASTFSDQFKKALLLSSAVFDNLQVCLGQDSEYKKIVEKLHFQEVICNSVLREDDAGFSKHNNIDFWREYISNFGIV 436
                                   ********************************************************************************* PP

                          GRAS 326 pvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   +++ls+  + qa+l++r++  +   +++ + +slv+gW + p+ +vSaW+
  Ote100244210031|100244210031 437 EAELSQISMYQASLMIRECRsWSCCTLKMNGKSLVIGWDGVPMRFVSAWK 486
                                   ********************77779************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.08394465IPR005202Transcription factor GRAS
PfamPF035145.2E-52124486IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MAEETQKNEL PLTFLHCVEA KNEVQHDFQA TFALLNKYGS QLKRLRCEKQ IEQCQLKHLQ  60
TELGKNASNS QVVSAVSIMT MAEMILSEST YQDTGDVSDL AKAFGFDSAI LCRHAEHLKR  120
VLWLIDASQK FSKQQYDEVE ELLMHALSGS LDGHPIETVL TFYGRHLRER IDVQRGMIDL  180
EREVEHVDVD QAIIDLKTAV RECEQKHPFS QISHFTGIQT ILDNVESAER IHFVDFGQKI  240
GSYWILVIDA LARREHCHVK QLKISAVCSX XXXXXXXXXX XXXXXESMNL PFVFKILYSE  300
KGMLENIDLE LEAGDAVVVY MEFFLVASLA CPRRAESFLR GLKHINPRVI VVVDVEADLK  360
ASTFSDQFKK ALLLSSAVFD NLQVCLGQDS EYKKIVEKLH FQEVICNSVL REDDAGFSKH  420
NNIDFWREYI SNFGIVEAEL SQISMYQASL MIRECRSWSC CTLKMNGKSL VIGWDGVPMR  480
FVSAWKFQQD CSNGKDLNMS H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-1815348637375GRAS family transcription factor containing protein, expressed
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100828.11e-156DELLA protein RGL1-like
TrEMBLA0A4D9BHV91e-155A0A4D9BHV9_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2044223