PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100244210051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

GRAS

Protein Properties

Length: 216aa MW: 24499.9 Da PI: 6.3681

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100244210051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	26.2	9.5e-09	104	216	5	117
GRAS 5 LlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklf 84 L+++ + +s+++ +a++lL ++ s d+ p+ + +++++ L++r+ + ++ ++++ + ++ ++ +a Ote100244210051\|100244210051 104 LIHASQKFSKQHYDKAEELLIHVL-SGSLDKHPIDTVLTFYARHLRERIDVNRGRIDLERQVEHVDVDQaIIDLKSAALEC 183 889999999999999999998874.4788999***************98666666555555555445244444454459 PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDf 117 + P+ ++sh+t qaIl+ v+ +er+H iDf Ote100244210051\|100244210051 184 EQKLPYSQISHFTGIQAILDTVAAAERIHFIDF 216 9*****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	3.3E-6	104	216	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MAEETQMDEV DPHDFQAPFA LLNKYGTQLK RFEQCQLKHP QTEPGKNASS SEVVSAVSIM 60 TVAEMILSKS AHQIQNTVDV SNLVKACGFD SAILCRHLKR VLWLIHASQK FSKQHYDKAE 120 ELLIHVLSGS LDKHPIDTVL TFYARHLRER IDVNRGRIDL ERQVEHVDVD QAIIDLKSAA 180 LECEQKLPYS QISHFTGIQA ILDTVAAAER IHFIDF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100828.1	2e-52	DELLA protein RGL1-like
TrEMBL	A0A4D8Y3Z9	3e-67	A0A4D8Y3Z9_SALSN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA20442	2	3