PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100244210061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

GRAS

Protein Properties

Length: 434aa MW: 48870.1 Da PI: 5.6692

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100244210061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	246.1	1.5e-75	66	425	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 + Ll cAe v+++d a++lL++ s+l+ ++++ mqRl+ +f eAL +++ r e+ + +p e++ ++ + l Ote100244210061\|100244210061 66 LQDLLLCAEKVNNKDYDSASWLLQKCSKLSFSRANVMQRLVYCFGEALGEKIDR---ETGRFNRPVEAA----INPSSGLV 139 6889************************************************...455444555554....55555566 PP GRAS 83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetg 162 +f+e P+ +++++t q + + v+g ++vHiiD++i Gl+++ LlqaLa+R+e +++iT+v s +s+ +eetg Ote100244210061\|100244210061 140 AFHENIPFNQVAQFTNIQLMADYVSGYNKVHIIDLEIHCGLHYLILLQALAARSECRLiRFKITAVLS---HSNSLIEETG 217 7*************************************************76655***99...68999* PP GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve 243 rL+++Ae+++++f+ +++ +++ +le + + ++ +E+++V+ +++l+++ +++ +les +++++ +++Pk +++ e Ote100244210061\|100244210061 218 VRLRSLAESFNLSFSLHLISLEDFLNLENNIFTLDVEESVIVHAAYALKHMIAKPNQLES----LIRAISNINPKAMIINE 294 ***************999**************************99999999....************* PP GRAS 244 qeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324 ea+ ns+ F++rf+eal y a+fd++e l ++ r++vE el+++ ++n a+eg+er+ r + Wr ++++G+ Ote100244210061\|100244210061 295 IEANVNSPVFVDRFVEALFLYGAFFDCVEDCLKSDVAVRAFVESELFSPPLRNSMAAEGDERKFRSVSIDVWRTFFGRFGM 375 ***************************************************************************** PP GRAS 325 kpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 +++ls+ a +qak++l++++ + ++ + ++l+ +Wk+ p+ s+SaW Ote100244210061\|100244210061 376 VEMELSTLALDQAKHVLKRFEcGGSCTLGLNGKCLIVYWKETPICSISAW 425 *****************65569999******************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	36.795	39	405	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.0E-73	66	425	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MPSRIRGARF EANNGENKQL ESTSTLSVID LIELASANFX XXXXXXXXXX XAISLSAENA 60 DDIQLLQDLL LCAEKVNNKD YDSASWLLQK CSKLSFSRAN VMQRLVYCFG EALGEKIDRE 120 TGRFNRPVEA AINPSSGLVA FHENIPFNQV AQFTNIQLMA DYVSGYNKVH IIDLEIHCGL 180 HYLILLQALA ARSECRLIRF KITAVLSHSN SLIEETGVRL RSLAESFNLS FSLHLISLED 240 FLNLENNIFT LDVEESVIVH AAYALKHMIA KPNQLESLIR AISNINPKAM IINEIEANVN 300 SPVFVDRFVE ALFLYGAFFD CVEDCLKSDV AVRAFVESEL FSPPLRNSMA AEGDERKFRS 360 VSIDVWRTFF GRFGMVEMEL STLALDQAKH VLKRFECGGS CTLGLNGKCL IVYWKETPIC 420 SISAWNFRTR KITT

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MPSRIRGARF EANNGENKQL ESTSTLSVID LIELASANFX XXXXXXXXXX XAISLSAENA  60
DDIQLLQDLL LCAEKVNNKD YDSASWLLQK CSKLSFSRAN VMQRLVYCFG EALGEKIDRE  120
TGRFNRPVEA AINPSSGLVA FHENIPFNQV AQFTNIQLMA DYVSGYNKVH IIDLEIHCGL  180
HYLILLQALA ARSECRLIRF KITAVLSHSN SLIEETGVRL RSLAESFNLS FSLHLISLED  240
FLNLENNIFT LDVEESVIVH AAYALKHMIA KPNQLESLIR AISNINPKAM IINEIEANVN  300
SPVFVDRFVE ALFLYGAFFD CVEDCLKSDV AVRAFVESEL FSPPLRNSMA AEGDERKFRS  360
VSIDVWRTFF GRFGMVEMEL STLALDQAKH VLKRFECGGS CTLGLNGKCL IVYWKETPIC  420
SISAWNFRTR KITT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-28	65	426	4	375	GRAS family transcription factor containing protein, expressed

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022863250.1	1e-131	DELLA protein RGL1-like
TrEMBL	A0A4D8ZRN2	1e-140	A0A4D8ZRN2_SALSN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3427	21	49