PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100244210071

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

GRAS

Protein Properties

Length: 539aa MW: 60528 Da PI: 5.6036

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100244210071	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	293.9	4.2e-90	167	537	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely.kalppsetseknsseelaal 81 ++ Ll A+ v++++ e+a ++L++ +++s++g+++qRl++yf eA ++++a ++ ++ k + ++ ++ +s++ l+++ Ote100244210071\|100244210071 167 IQNLLFSAHKVAQHNYEEALEFLKECDKRSSSTGTTIQRLVFYFSEAFSEKIAAETGGILpKESEKKPFDPLESVTFLNMD 247 688899999*******************************************666665134455555555566666665 PP GRAS 82 kl..fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeele 159 + f++ P+ +++ l+ qa+l+ v++++++H+iD++i G++W L+qaLa+R+e++ +l+iT+vg +sk le Ote100244210071\|100244210071 248 LMiaFHKKHPLAQITKLVGVQAVLDHVHEARKLHVIDLGIRSGVHWTILIQALATRRENSLlHLKITAVGT---KSKSVLE 325 5578**********************************************99955555*****...68* PP GRAS 160 etgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv 240 g+rL++fA+ l+v+f+++ +++++++dl+ +++++kp+E+++V +++l++l+ +++e+ +++++++k+l+P v+v Ote100244210071\|100244210071 326 DAGRRLESFAQLLNVEFSYRSVLVEDISDLNKNQFDLKPDESVVVYASYALMSLV---GKVEE-LNHLMRVMKDLKPCVMV 402 **************************************************9...55555.667********** PP GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321 v+e ea++ns+sF+ rf+e+l + a+fds++ + +++ r++ E+++++++i+n+va+eg+er+ rh t++ Wr + + Ote100244210071\|100244210071 403 VAELEANCNSPSFVGRFVESLFLFGAFFDSVADCFRSDETSRVNAEAFWFKPSITNIVAAEGDERKIRHVTMNVWRVFFAR 483 ***************************************************************************** PP GRAS 322 aGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +GF +++ls++ +qa+l l+ v+ ++ ++ + +l+lgWk+ pL s+SaW+ Ote100244210071\|100244210071 484 MGFLEIELSSSSLDQARLGLQSVPcGNSCSLYRDGRCLTLGWKGTPLCSLSAWK 537 ********************9999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.599	140	516	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-87	167	537	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MGSKDSSENL HSYGVEGQIA SNDEPIMPTS QQQHFDEFID FGDLYVDVVS PPFQSCEDEI 60 KKIMGIQTKN IELIEPKESK SHVFMSESFE ALRKYRSRRL KLDGDSSSIG YNASATSLST 120 EATIRMAAEK FIFSMPHSSD DLSILDHPNQ CLLSTHFGVD SEEVELIQNL LFSAHKVAQH 180 NYEEALEFLK ECDKRSSSTG TTIQRLVFYF SEAFSEKIAA ETGGILPKES EKKPFDPLES 240 VTFLNMDLMI AFHKKHPLAQ ITKLVGVQAV LDHVHEARKL HVIDLGIRSG VHWTILIQAL 300 ATRRENSLLH LKITAVGTKS KSVLEDAGRR LESFAQLLNV EFSYRSVLVE DISDLNKNQF 360 DLKPDESVVV YASYALMSLV GKVEELNHLM RVMKDLKPCV MVVAELEANC NSPSFVGRFV 420 ESLFLFGAFF DSVADCFRSD ETSRVNAEAF WFKPSITNIV AAEGDERKIR HVTMNVWRVF 480 FARMGFLEIE LSSSSLDQAR LGLQSVPCGN SCSLYRDGRC LTLGWKGTPL CSLSAWKLP

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MGSKDSSENL HSYGVEGQIA SNDEPIMPTS QQQHFDEFID FGDLYVDVVS PPFQSCEDEI  60
KKIMGIQTKN IELIEPKESK SHVFMSESFE ALRKYRSRRL KLDGDSSSIG YNASATSLST  120
EATIRMAAEK FIFSMPHSSD DLSILDHPNQ CLLSTHFGVD SEEVELIQNL LFSAHKVAQH  180
NYEEALEFLK ECDKRSSSTG TTIQRLVFYF SEAFSEKIAA ETGGILPKES EKKPFDPLES  240
VTFLNMDLMI AFHKKHPLAQ ITKLVGVQAV LDHVHEARKL HVIDLGIRSG VHWTILIQAL  300
ATRRENSLLH LKITAVGTKS KSVLEDAGRR LESFAQLLNV EFSYRSVLVE DISDLNKNQF  360
DLKPDESVVV YASYALMSLV GKVEELNHLM RVMKDLKPCV MVVAELEANC NSPSFVGRFV  420
ESLFLFGAFF DSVADCFRSD ETSRVNAEAF WFKPSITNIV AAEGDERKIR HVTMNVWRVF  480
FARMGFLEIE LSSSSLDQAR LGLQSVPCGN SCSLYRDGRC LTLGWKGTPL CSLSAWKLP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-44	166	537	4	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022868730.1	0.0	DELLA protein RGL1-like
TrEMBL	A0A2G9I0D4	1e-167	A0A2G9I0D4_9LAMI; Uncharacterized protein
STRING	Migut.G00048.1.p	1e-149	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3427	21	49