PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100245430211
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TALE
Protein Properties Length: 190aa    MW: 22440.9 Da    PI: 9.9421
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100245430211genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.1e-091471792355
                                   SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                   +yps++e+  L + +gL+++q+k+WF N+R ++
  Ote100245430211|100245430211 147 PYPSEAEKIALGECTGLEQKQIKNWFINQRKRH 179
                                   8*****************************885 PP
2ELK22.62.4e-0899116522
                           ELK   5 qLlrKYsgyLgsLkqEFs 22 
                                   + +rKYsgy gs+kqE++
  Ote100245430211|100245430211  99 EIMRKYSGYFGSVKQEIM 116
                                   559**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037905.9E-73152IPR005540KNOX1
PfamPF037912.6E-55178IPR005541KNOX2
SMARTSM011880.003595116IPR005539ELK domain
PfamPF037891.6E-5101116IPR005539ELK domain
SMARTSM003891.5E-10118186IPR001356Homeobox domain
PROSITE profilePS5007111.321119182IPR001356Homeobox domain
CDDcd000869.41E-10122183No hitNo description
SuperFamilySSF466895.13E-17124186IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-24126184IPR009057Homeodomain-like
PfamPF059203.2E-16139178IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MNMMPPLTLP FSHPNLPSAS SPMSSSEQFQ RQKITDHPHF HRLLIAYVNC QKYEQELLRP  60
LQEATLFLAT IERHLIRLSG RNGEEEVECI AEEERVKSEI MRKYSGYFGS VKQEIMMKKK  120
IRNKAEKLPK QATQHLLNWW ATHHHWPYPS EAEKIALGEC TGLEQKQIKN WFINQRKRHW  180
KPSKNLISLN
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889118.13e-47homeobox protein SBH1
SwissprotP466085e-42HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A1U8PGR13e-45A0A1U8PGR1_GOSHI; homeobox protein SBH1-like
STRINGXP_010555877.12e-43(Tarenaya hassleriana)
STRINGEOY288073e-43(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]