PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100246550041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HD-ZIP

Protein Properties

Length: 187aa MW: 21655.5 Da PI: 8.6453

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100246550041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.6	2.8e-20	27	79	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++++eqle Le+ F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k Ote100246550041\|100246550041 27 KKRLSTEQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 79 55699***********************************************9 PP
2	HD-ZIP_I/II	123.5	1e-39	26	116	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 kk+rls+eq+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k kqlE+ y+aLk++yda+++++++L++ Ote100246550041\|100246550041 26 KKKRLSTEQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKGKQLERLYDALKQEYDAVSRDKHKLQQ 106 9****************************************************************************** PP HD-ZIP_I/II 83 eveeLreelk 92 ev +Lr+ lk Ote100246550041\|100246550041 107 EVLALRAILK 116 ****8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.297	21	81	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.7E-19	22	82	IPR009057	Homeodomain-like
SMART	SM00389	3.5E-18	24	85	IPR001356	Homeobox domain
CDD	cd00086	2.20E-16	26	82	No hit	No description
Pfam	PF00046	2.0E-17	27	79	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.1E-21	28	88	IPR009057	Homeodomain-like
PRINTS	PR00031	5.0E-6	52	61	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	56	79	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.0E-6	61	77	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.4E-7	81	115	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MKXXXXXXXX XXXXXXXXXX XXHDPKKKRL STEQLESLEN SFQEEIKLDP DRKMKLAKEL 60 GLQPRQIAVW FQNRRARWKG KQLERLYDAL KQEYDAVSRD KHKLQQEVLA LRAILKDQVA 120 KKQVSTGYTD VSGEETVEST SIPSSDKGRG DQTNNQMGEC NYVLNVDDYT PMMMTPNYNW 180 GGLPSCP

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094442.1	9e-95	putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	7e-51	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A4D9C620	5e-98	A0A4D9C620_SALSN; Homeobox-leucine zipper protein
STRING	Migut.J00491.1.p	2e-92	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3869	22	46

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]