PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100247360041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WRKY

Protein Properties

Length: 226aa MW: 25232.2 Da PI: 8.5612

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100247360041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.8	2e-32	146	203	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fpr+YY+Cts++C vkk +ers++dp++v++tY g+Hnh+ Ote100247360041\|100247360041 146 EDGYRWRKYGQKAVKNSPFPRNYYKCTSQKCGVKKLIERSSKDPSLVITTYIGKHNHH 203 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.4E-33	130	205	IPR003657	WRKY domain
SuperFamily	SSF118290	3.66E-28	138	205	IPR003657	WRKY domain
PROSITE profile	PS50811	30.813	140	205	IPR003657	WRKY domain
SMART	SM00774	3.2E-37	145	204	IPR003657	WRKY domain
Pfam	PF03106	2.2E-25	146	203	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MGSDQGFQDS FMAAYNYDFT PSMYYLQQPL QNPRGIFDMS SFFHGGYNPP QHALDQPIFA 60 DIYSNKNVGE DNSIAAQIIP PMTPNPSPSF EAGEEEDSSM GDQKGSVCEE GGDLKSNKVK 120 EKKKEEKRPR EARFAFVTKS GVDNLEDGYR WRKYGQKAVK NSPFPRNYYK CTSQKCGVKK 180 LIERSSKDPS LVITTYIGKH NHHSPATLRG SAAASSVCIA QFSLKT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	8e-28	138	206	10	78	Probable WRKY transcription factor 4
2lex_A	8e-28	138	206	10	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098088.1	3e-54	probable WRKY transcription factor 71 isoform X1
Swissprot	Q93WV4	8e-42	WRK71_ARATH; WRKY transcription factor 71
TrEMBL	A0A4D9AJT9	4e-68	A0A4D9AJT9_SALSN; Uncharacterized protein
STRING	Migut.M00487.1.p	1e-52	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1485	24	75

Publications ? help Back to Top
Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700] Yu Y, et al. WRKY71 accelerates flowering via the direct activation of FLOWERING LOCUS T and LEAFY in Arabidopsis thaliana. Plant J., 2016. 85(1): p. 96-106 [PMID:26643131] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Yu Y, et al. WRKY71 Acts Antagonistically Against Salt-Delayed Flowering in Arabidopsis thaliana. Plant Cell Physiol., 2018. 59(2): p. 414-422 [PMID:29272465]