PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100247590311
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 202aa    MW: 23400.1 Da    PI: 4.547
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100247590311genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.2e-182974148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg++T+eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  Ote100247590311|100247590311 29 RGNFTEEEEETIINLHQMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 74
                                  89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.0541023IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.7E-121034IPR009057Homeodomain-like
SuperFamilySSF466895.01E-231080IPR009057Homeodomain-like
PROSITE profilePS5129426.3282478IPR017930Myb domain
SMARTSM007172.4E-152876IPR001005SANT/Myb domain
PfamPF002491.2E-162974IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-243579IPR009057Homeodomain-like
CDDcd001672.05E-54273No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MSFNTKGLLR CGKSCRLRWI NYLKPDIKRG NFTEEEEETI INLHQMLGNR WSAIAARLPG  60
RTDNEIKNVW HTHLKKKLKN NKSFQDSKRL SILDCDDNIE NVDIIVTDSP QRCSSEISSV  120
TDSSLEKIAV KKEEVDYSSE YFPTIDESYW SEDLPREDAK EITEDVHAEI ECVNDSKVDD  180
GSMDFWYNLL TRAGDMPDLP EF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-20107840108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091315.12e-95myb-related protein Myb4
SwissprotQ9SJX85e-50MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A059PSM12e-94A0A059PSM1_SALMI; MYB-related transcription factor
STRINGMigut.G00519.1.p2e-76(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]