PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100247620011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 153aa MW: 17073.3 Da PI: 8.3521

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100247620011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.1	1.3e-42	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrrkC ++C++apyfp e+p kf nvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ Ote100247620011\|100247620011 12 PCAACKFLRRKCLSGCIFAPYFPPEEPTKFFNVHKIFGASNVSKLLNEILPHQREDAVNSLAYEAEARLKDPVYGCVGAIS 92 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 lq+q+ ql++el+++k+ Ote100247620011\|100247620011 93 VLQRQVLQLQKELDATKAD 111 ***********999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.908	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-42	12	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MASSSCSYSN PPCAACKFLR RKCLSGCIFA PYFPPEEPTK FFNVHKIFGA SNVSKLLNEI 60 LPHQREDAVN SLAYEAEARL KDPVYGCVGA ISVLQRQVLQ LQKELDATKA DLMRFTRNET 120 LNITHYSRRI TPYGSGYFYA ENPDAGYSSN SSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-62	2	123	1	122	LOB family transfactor Ramosa2.1
5ly0_B	4e-62	2	123	1	122	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097516.1	1e-76	LOB domain-containing protein 25-like
Swissprot	Q8L8Q3	2e-65	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A4D9BIR3	4e-76	A0A4D9BIR3_SALSN; Uncharacterized protein
STRING	XP_009597524.1	1e-73	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]