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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Ote100248100031 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 239aa MW: 27214.9 Da PI: 8.9075 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 13.4 | 0.00023 | 45 | 67 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C+ C + F++ L H+++H
Ote100248100031|100248100031 45 YSCSFCRRDFRSAQALGGHMNVH 67
99*******************99 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57667 | 3.17E-6 | 42 | 71 | No hit | No description |
| PROSITE profile | PS50157 | 11.136 | 45 | 72 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 47 | 67 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 239 aa Download sequence Send to blast |
MEEARYWMWA KSNPRALAGD SWEEQAFAED AAGALGGCVW PPRSYSCSFC RRDFRSAQAL 60 GGHMNVHRRD RARLKQSPNP AAEVVPERNH ALNTCTSQMC TFFFTNPNPK FSTAGGGFRI 120 SSPPLPSAVK VVDRRDEEEE KVSSNFCFFS PKKGSLASLN HAPPWSSFLS RKRDRYDEEK 180 SAVANNSESR VEREDLNLVV GQWETDTCSD EEVARFKRRR IDQAXXXXXX LLRRRRFGS |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1njq_A | 2e-12 | 40 | 67 | 2 | 29 | superman protein |
| 2l1o_A | 2e-12 | 40 | 67 | 2 | 29 | Transcriptional regulator SUPERMAN |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011094902.1 | 2e-74 | zinc finger protein 10 | ||||
| TrEMBL | A0A2G9H639 | 1e-63 | A0A2G9H639_9LAMI; Uncharacterized protein | ||||
| STRING | Migut.J00299.1.p | 9e-52 | (Erythranthe guttata) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA9045 | 20 | 26 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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