PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100248320071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 457aa    MW: 52768.6 Da    PI: 7.6214
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100248320071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00121941123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y C++Cg + s k +  +Hir H
  Ote100248320071|100248320071 19 YYCEYCGICRSKKALIASHIRAH 41
                                  89*******************96 PP
2zf-C2H221.65.7e-076384223
                                  EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                                  +C+ Cg sF+ + +Lk+H+++H
  Ote100248320071|100248320071 63 VCEECGASFRKPAHLKQHMQSH 84
                                  6*******************99 PP
3zf-C2H217.79.6e-06127151123
                                   EEET..TTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                   + C+  dC  s++rk++L+rH+  H
  Ote100248320071|100248320071 127 FICSvdDCQSSYRRKDHLTRHMLQH 151
                                   789999****************988 PP
4zf-C2H218.84.6e-06156181123
                                   EEET..TTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                   ++Cp  dC+++F+ +sn +rH +  H
  Ote100248320071|100248320071 156 FECPveDCKRTFTLQSNVTRHVKGfH 181
                                   89*******************99777 PP
5zf-C2H214.69.7e-05212236223
                                   EET..TTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                                   +Cp  dC+++F++  ++k H +  H
  Ote100248320071|100248320071 212 ECPvqDCKRTFKSEGHMKWHVKEfH 236
                                   69999****************9988 PP
6zf-C2H216.81.8e-05250274123
                                   EEET..TTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                   ++C    Cgk+F+ +s L +H  +H
  Ote100248320071|100248320071 250 HVCAdpQCGKVFKYPSKLSKHEDSH 274
                                   688888***************9888 PP
7zf-C2H220.11.7e-06341365223
                                   EET..TTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                                   +C+   C+++Fs+ snL++Hi+  H
  Ote100248320071|100248320071 341 SCSvkGCSRTFSTTSNLNQHIKAvH 365
                                   588889***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.65E-91784No hitNo description
PROSITE profilePS501579.2451946IPR007087Zinc finger, C2H2
SMARTSM00355211941IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.9E-75885IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.036289IPR007087Zinc finger, C2H2
SMARTSM003550.00266284IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.9E-10124153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.72E-7124153No hitNo description
SMARTSM003550.0034127151IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723127156IPR007087Zinc finger, C2H2
PROSITE patternPS000280129151IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-5154179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.86E-5154182No hitNo description
PROSITE profilePS5015710.284156181IPR007087Zinc finger, C2H2
SMARTSM003550.013156181IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280158181IPR007087Zinc finger, C2H2
SMARTSM003550.0058211236IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.912211237IPR007087Zinc finger, C2H2
PROSITE patternPS000280213236IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.3E-4250274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.2250274IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45250279IPR007087Zinc finger, C2H2
PROSITE patternPS000280252274IPR007087Zinc finger, C2H2
SMARTSM003552.4282307IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280284307IPR007087Zinc finger, C2H2
SMARTSM0035513310331IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.3E-7321362IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.83E-10321381No hitNo description
PROSITE profilePS5015712.05340370IPR007087Zinc finger, C2H2
SMARTSM003550.0014340365IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280342365IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.4E-6369393IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.3371397IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280373397IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MVDEGEKPRA PIFRDIRRYY CEYCGICRSK KALIASHIRA HHEEELKEKE LNEADEHGEK  60
LNVCEECGAS FRKPAHLKQH MQSHSLENSK MREAAILLDW ISTRWVTAWE APPSLPRSRL  120
LNFERPFICS VDDCQSSYRR KDHLTRHMLQ HEGKLFECPV EDCKRTFTLQ SNVTRHVKGF  180
HQESACANLE HPDDSDSLES DKHEDSSGKL LECPVQDCKR TFKSEGHMKW HVKEFHSESA  240
CADVNHPLGH VCADPQCGKV FKYPSKLSKH EDSHVKLDTV EAFCAEPGCM KYFSNEQCLK  300
EHIRSCHQYV VCDECGTKHL KKNIKRHMRS HEGELTPGRI SCSVKGCSRT FSTTSNLNQH  360
IKAVHWELKP FACGIPGCDK RFTYKHVRDN HEKSGCHIYT AGDFGASDEQ FRLRPRGGRK  420
RTYPVIETLM RKRIVPPTES ELVGNEGSWQ IYSEYED
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079244.11e-174transcription factor IIIA
SwissprotQ84MZ41e-139TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A4D8Z9A30.0A0A4D8Z9A3_SALSN; Uncharacterized protein
STRINGMigut.K00168.1.p1e-164(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447