PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100249180041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 210aa    MW: 23193.6 Da    PI: 7.7353
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100249180041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.9e-09115146334
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkg 34 
                                   +WT+eE+ l++ +  ++G+g+W++I+r + k+
  Ote100249180041|100249180041 115 PWTEEEHRLFLLGLDKFGKGDWRSISRNFRKR 146
                                   7**************************99844 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.043135IPR017877Myb-like domain
PROSITE profilePS500906.353108146IPR017877Myb-like domain
SMARTSM007170.0012112161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-8113147IPR009057Homeodomain-like
CDDcd001674.02E-8115146No hitNo description
SuperFamilySSF466891.27E-7115156IPR009057Homeodomain-like
PfamPF002499.4E-7115146IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MHWNDECREQ SWTKIASLVP SKSIPELKNH YQLLLEDVAA IEAGNVPLPN YNNTTTSLIS  60
TTTYKDHFHH NDKPFSNSTF SPVLSHDSVS AQPPTTTKAG GASSRSDQER RKGIPWTEEE  120
HRLFLLGLDK FGKGDWRSIS RNFRKRRYPD ISSAADNWPT AASSTCNEAS ETQXXXXXGI  180
YGSAPVGQPV ALPPGRHIAS AVGTPVMMPP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073055.11e-64LOW QUALITY PROTEIN: transcription factor MYBS1
TrEMBLA0A4D9C3R16e-84A0A4D9C3R1_SALSN; Uncharacterized protein
STRINGXP_008453372.12e-55(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58012136