PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100249890081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 390aa    MW: 43303.7 Da    PI: 7.1275
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100249890081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.3e-09204251455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Ote100249890081|100249890081 204 SHSLAERVRREKISERMKYLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 251
                                   8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.62E-9198255No hitNo description
SuperFamilySSF474594.58E-17198268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-17200266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.624200250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6204251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-10206256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MNSGLPEMLH CLNSNSENSE MTVLERQRLR LKWQQQQSSL SYFNGGDQLA FLGLNSDQGL  60
CELVANGPMK PDPVVENGWN VLNYGNASEL PRTASCPPNM AASLQKEAAL IXXXXXXXXX  120
KESCKKRKAD KTQNLKVAAS EEKKMKECTE ESKVTEQTSN SKSTTTTVST STNKNSKGPS  180
KQSSEAPKTD YIHVRARRGQ ATDSHSLAER VRREKISERM KYLQDLVPGC NKVTGKAGML  240
DEIINYVQSL QRQVEFLSMK LAAINPRLDF DIDSCLVKEI FPASTSSVHT MGASSSGMVN  300
HGQVQFNTSV SGLEMVVDPM DCTLRRTISA PVSIPQTFLD PSGLNPIQHI TWEDELQNLY  360
SMEYQQGRST SFISQPITGF LEANHVKLEM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088410.11e-175transcription factor bHLH63 isoform X2
TrEMBLA0A0H3YB620.0A0A0H3YB62_SALMI; Basic helix-loop-helix transcription factor
STRINGXP_008236908.11e-130(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65382330