PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100250670051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 238aa MW: 26159.5 Da PI: 8.4738

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100250670051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.9	1.3e-41	55	154	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++ e +r da++slvyeA++r+rdPvyG++g i+ Ote100250670051\|100250670051 55 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLMEVAEPQRADAANSLVYEANVRLRDPVYGCMGAIS 135 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 +lqqq+++l+ael+++++e Ote100250670051\|100250670051 136 ALQQQIQTLQAELNAVRAE 154 *************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.728	54	155	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-41	55	152	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MSREREGFDE IGKKLKTEID GXXXXXXXSL SSSSPVSMGR RHVFGPPGSL NTITPCAACK 60 LLRRRCAEEC PFSPYFSPHE PHKFAAVHKV FGASNVSKML MEVAEPQRAD AANSLVYEAN 120 VRLRDPVYGC MGAISALQQQ IQTLQAELNA VRAEILRYKY REAANSIIAS TNAALAVXXX 180 XXXXXXXXXX XXXXXXXXXX XXXSVVISTA SSAPSMYTSP SSTASYSSIS NNHIPFFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-43	55	162	11	118	LOB family transfactor Ramosa2.1
5ly0_B	2e-43	55	162	11	118	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027091071.1	1e-107	LOB domain-containing protein 15-like isoform X2
Swissprot	Q8L5T5	2e-79	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A4D8YJA1	1e-115	A0A4D8YJA1_SALSN; Uncharacterized protein
STRING	Migut.N00746.1.p	9e-99	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]