PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100251420021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 307aa    MW: 34222 Da    PI: 5.8056
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100251420021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.14.1e-24122183159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                   ++Dgy+WrKYGqK++ ++++pr+Y+rCt++   gC + k+ ++ ++dp +  +tY+g+H+++
  Ote100251420021|100251420021 122 VEDGYAWRKYGQKVILNAKHPRNYFRCTHKfdqGCLASKQTQKIQDDPPLYRTTYHGRHTCT 183
                                   58***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-25112183IPR003657WRKY domain
PROSITE profilePS5081121.184117180IPR003657WRKY domain
SuperFamilySSF1182906.28E-24119183IPR003657WRKY domain
SMARTSM007745.2E-36122184IPR003657WRKY domain
PfamPF031061.5E-22123182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDSSSCVVTE TRRLAGQERV IGELTRGREI ADRLRLMLRQ TGSADSVLPA QTLVAQLLDT  60
FSHSLSMLRD GADSDEVSQA PSDVKSEDSG DSCKTPAAKD RRGSYKRKRS SDTTIKDSPN  120
LVEDGYAWRK YGQKVILNAK HPRNYFRCTH KFDQGCLASK QTQKIQDDPP LYRTTYHGRH  180
TCTNLVKSAH HIIIDAPIPD SAILWNFDSR RRGTAPDEAT LLVDSIKQEE DVRTKSLELG  240
GVEYYMLPEL TDFRSTHDSL ATFLSGSNHG DVLSSDVYSC TESTHSIDDM DAMVGSFEDF  300
LEFGSLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-22122182868OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022887137.13e-85probable WRKY transcription factor 53
TrEMBLA0A2G9HV231e-118A0A2G9HV23_9LAMI; Uncharacterized protein
STRINGMigut.J00031.1.p1e-82(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42302143