PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100251590061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 474aa    MW: 51424.2 Da    PI: 7.5265
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100251590061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.4e-0983103425
                                   ---SGGGGTS--TTTTT-SS-S CS
                       zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                                   ++C+++ + G C+yGd+CkF H
  Ote100251590061|100251590061  83 KICNYWVQ-GSCRYGDSCKFLH 103
                                   68******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00272550IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0652551IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.72779106IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-580105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.3E-780104IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-783103IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-883102IPR000571Zinc finger, CCCH-type
SuperFamilySSF509781.83E-41102157IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.9E-11103245IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.0071106148IPR001680WD40 repeat
PfamPF004000.0064113148IPR001680WD40 repeat
PROSITE profilePS5008212.781116157IPR001680WD40 repeat
PROSITE profilePS5029411.946116157IPR017986WD40-repeat-containing domain
PROSITE patternPS006780135149IPR019775WD40 repeat, conserved site
PRINTSPR003201.0E-6135149IPR020472G-protein beta WD-40 repeat
SuperFamilySSF509781.83E-41258469IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.103.9E-32262468IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.0023301338IPR001680WD40 repeat
PfamPF004000.022306338IPR001680WD40 repeat
PROSITE profilePS5029417.719308387IPR017986WD40-repeat-containing domain
PROSITE profilePS5008211.511308347IPR001680WD40 repeat
PRINTSPR003201.0E-6325339IPR020472G-protein beta WD-40 repeat
SMARTSM003201.4E-5341378IPR001680WD40 repeat
PfamPF004001.2E-4343377IPR001680WD40 repeat
PROSITE profilePS500829.64348387IPR001680WD40 repeat
PRINTSPR003201.0E-6365379IPR020472G-protein beta WD-40 repeat
SMARTSM003205.5382425IPR001680WD40 repeat
SMARTSM003200.84428465IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MDVDGGRRIF NRLGPSSSGD HSNNSKQQKV CFNWEKGKCS RNSCPFLHGE LPTAAKGKRG  60
YQGGPSQQSL SGNRPFLRKV EKKICNYWVQ GSCRYGDSCK FLHQWSTDCF FLLTPLEGHQ  120
KAVTGITLPL GSDKLYSGSE DEMVRVWDCQ SGQLAGLVNL GCPVGCMLSE GPWVFVGLTN  180
LVKAWNIQTS MELSLSGPVG QVYSIVVGND LLFAGSKVCD SGAWSATAVL CQRQVAWWSV  240
GSRFDGVDCH KADTSSCLTP WSVACASGAS QTLLASGKQK HPAHSMDGSI LAWKFNAVAN  300
GFEPAASLKG HTLAVVTLVV GGSRIYSGSM DHTIRVWSLE TLQCVQTLSG HNNVVTSVLC  360
WDQFLLSASL DNTVKVWATS ETGNLEVTYT HQEEHGLITL CGMHDSESKP VLLCSCNDNC  420
VRVYDLPSFS ERGKIFSKEE VRSIQIGPGG LFFTGDGSGQ VRVWKWSTEA STMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A3e-201134686320Tako8
6g6n_A3e-201134686320Tako8
6g6n_B3e-201134686320Tako8
6g6n_C3e-201134686320Tako8
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021827028.11e-180zinc finger CCCH domain-containing protein 48
TrEMBLA0A4D9BGB20.0A0A4D9BGB2_SALSN; Uncharacterized protein
STRINGEMJ192311e-179(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134