PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100252780021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 221aa    MW: 24510 Da    PI: 10.7764
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100252780021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271e-089451147
                                  HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  +++d+ +++G g+Wk I+r+   +R+  q+ s+ qky
  Ote100252780021|100252780021  9 RFLDGLERFGRGNWKNISRYSVRTRSNSQVASHAQKY 45
                                  8***********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.17E-9750IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-10848IPR006447Myb domain, plants
CDDcd001676.87E-5846No hitNo description
Gene3DG3DSA:1.10.10.602.1E-4947IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MLVSTWYRRF LDGLERFGRG NWKNISRYSV RTRSNSQVAS HAQKYFNRLS SGKEGKRLSI  60
NDITTVDPEK LPALEKATTS CKGKSKSINA GTAKEVLTRS FEKGSMRAKN QLLPQLMPKR  120
SKRASIVDGF PMKASTEMGN KLQVKRARSE TGFQLLPPPP FVDPPFSGQT IAGPSFSSTT  180
CKKPSPPFAT QGPSIRGPTE DDFGSTDIMD LDLSMFPHFL D
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1515946