PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100252780031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 120aa    MW: 13672.2 Da    PI: 4.6825
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100252780031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.5e-102970444
                                  S-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHH CS
               Myb_DNA-binding  4 WTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrw 44
                                  WT+eEd+ + +a +++ ++   W++Ia  ++ g+t +++k ++
  Ote100252780031|100252780031 29 WTKEEDKAFENALAKYFNDadMWDKIALAVP-GKTIEDLKIHY 70
                                  *******************************.********999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.8E-52576IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-62575IPR009057Homeodomain-like
SuperFamilySSF466892.51E-92684IPR009057Homeodomain-like
PfamPF002495.2E-82870IPR001005SANT/Myb domain
PROSITE profilePS500906.6552974IPR017877Myb-like domain
CDDcd001673.18E-82970No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MDADLTFSSC SWPMEGATAS KNTCTDPYWT KEEDKAFENA LAKYFNDADM WDKIALAVPG  60
KTIEDLKIHY EASIDNVVTI ESCKVPLPSY RSKVSGQKER LSPEHREQAR GTPWTEEEHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1429921175RADIALIS
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012853388.12e-31PREDICTED: transcription factor DIVARICATA-like
TrEMBLA0A2G9H9E61e-38A0A2G9H9E6_9LAMI; Zuotin
STRINGMigut.N03245.1.p7e-31(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1515946