PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100253370001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 292aa    MW: 32865.9 Da    PI: 9.405
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100253370001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-081256345
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                                  rWT+ E +++ +a +++  +   +W ++a++++ g+t  +++  + 
  Ote100253370001|100253370001 12 RWTPAENKQFENALAMFDENtpdRWQKVAAMVP-GKTVGDVIRQYK 56
                                  9********************************.****99998876 PP
2Myb_DNA-binding45.91.3e-14120164347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Ote100253370001|100253370001 120 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 164
                                   8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.064861IPR017884SANT domain
SMARTSM007171.7E-9961IPR001005SANT/Myb domain
SuperFamilySSF466892.51E-111166IPR009057Homeodomain-like
CDDcd001671.07E-71258No hitNo description
PfamPF002491.2E-61257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-13111169IPR009057Homeodomain-like
PROSITE profilePS5129420.728113169IPR017930Myb domain
SuperFamilySSF466896.5E-17114168IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-17116168IPR006447Myb domain, plants
SMARTSM007173.2E-13117167IPR001005SANT/Myb domain
PfamPF002495.1E-13120164IPR001005SANT/Myb domain
CDDcd001671.37E-11120165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MLWLLDESRS TRWTPAENKQ FENALAMFDE NTPDRWQKVA AMVPGKTVGD VIRQYKELED  60
DVSSIEAGLI PVPGYNTSSP FTLEWGSSHG FEGFKQSFVA GGRKAAAGRP SEQERKKGVP  120
WTEEEHKLFL MGLKKYGKGD WRNISRNFVI TRTPTQVASH AQKYFIRQLS GGKDKRRASI  180
HDITTVNLND HHTPSPDSKK QPSPDQPSIL GPQSNPTTIQ KLPYQWNQTS NETVMGFSSL  240
CHGNMFTSSP YGMASYGLKM HGQLQRGVVH DSYMGSQNMA FQMQPELHYP NA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-1413781176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080854.10.0transcription factor DIVARICATA isoform X1
RefseqXP_020550520.10.0transcription factor DIVARICATA isoform X2
SwissprotQ8S9H71e-170DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A4D8YRZ71e-169A0A4D8YRZ7_SALSN; Uncharacterized protein
STRINGPOPTR_0001s25590.11e-149(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]