PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100253380041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

C3H

Protein Properties

Length: 391aa MW: 42793.7 Da PI: 7.008

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100253380041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.2	1.1e-06	21	37	11	26
GTS.--TTTTT-SS-SS CS zf-CCCH 11 rtG.tCkyGdrCkFaHg 26 r+G C+yG+rC F+H+ Ote100253380041\|100253380041 21 RSGeRCRYGNRCEFIHP 37 56779***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
FEGDNDYIGN LEVKWGRVSG RSGERCRYGN RCEFIHPNPQ QTQTNPFGFG NQTGAQIQDT 60 RQPVSNPFGF GSKSNQPKPF ENKWSRFSPL NNASTSRQPD NKPQAASHKC TDPQSCKQMI 120 QADLKNEEEK PLWKLTCYGH SQNGPCDITG DISYDELRAL AYDDYKNGKS LEAIVERERN 180 LLASKLIEFQ NLREPHTVSS APIPSSQKFF AGGNTNAPNI NNGFSTQVSS FSQLSGSLKT 240 RSAAVPNYSF GQASAFQNNS QPSGLFQTNN SSFNSSGSAG ISGSQPQQFI QSAFPFGTSR 300 PTSGGESPQQ NPFSTLGNSL LTGNGVNKQF NFFSNEPSLA SNTIGHSTSS IQAIDIPKEN 360 TNADGSVWTK SEWKWNAAEI PEEAPPDIYI R

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

FEGDNDYIGN LEVKWGRVSG RSGERCRYGN RCEFIHPNPQ QTQTNPFGFG NQTGAQIQDT  60
RQPVSNPFGF GSKSNQPKPF ENKWSRFSPL NNASTSRQPD NKPQAASHKC TDPQSCKQMI  120
QADLKNEEEK PLWKLTCYGH SQNGPCDITG DISYDELRAL AYDDYKNGKS LEAIVERERN  180
LLASKLIEFQ NLREPHTVSS APIPSSQKFF AGGNTNAPNI NNGFSTQVSS FSQLSGSLKT  240
RSAAVPNYSF GQASAFQNNS QPSGLFQTNN SSFNSSGSAG ISGSQPQQFI QSAFPFGTSR  300
PTSGGESPQQ NPFSTLGNSL LTGNGVNKQF NFFSNEPSLA SNTIGHSTSS IQAIDIPKEN  360
TNADGSVWTK SEWKWNAAEI PEEAPPDIYI R

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078164.1	1e-134	zinc finger CCCH domain-containing protein 46 isoform X1
Refseq	XP_011078165.1	1e-134	zinc finger CCCH domain-containing protein 46 isoform X2
Refseq	XP_020549342.1	1e-134	zinc finger CCCH domain-containing protein 46 isoform X1
TrEMBL	A0A4D8YYV6	1e-112	A0A4D8YYV6_SALSN; Nucleoporin-like protein 2

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9439	20	22