PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100253700041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 231aa    MW: 25839.2 Da    PI: 8.3702
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100253700041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.27.9e-1592143256
                                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   rk+ ++tk q   Lee F+ +++++    +eLA++l+L  rqV vWFqNrRa+ k
  Ote100253700041|100253700041  92 RKKLRLTKAQSALLEESFKLHSTLNP---QELARELKLRPRQVEVWFQNRRARTK 143
                                   678899******************98...57**********************98 PP
2HD-ZIP_I/II108.64.5e-3592178191
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   +kk+rl+k q++lLEesF+ +++L+p+   elareL+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l++en+rL+
  Ote100253700041|100253700041  92 RKKLRLTKAQSALLEESFKLHSTLNPQ---ELARELKLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLSNENQRLQ 169
                                   69************************6...7************************************************** PP

                   HD-ZIP_I/II  82 keveeLreel 91 
                                   ke +eL+ +l
  Ote100253700041|100253700041 170 KELQELK-TL 178
                                   ******9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.72E-1582146IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-1385148IPR009057Homeodomain-like
PROSITE profilePS5007113.23288145IPR001356Homeobox domain
SMARTSM003891.6E-1190149IPR001356Homeobox domain
PfamPF000462.5E-1292143IPR001356Homeobox domain
CDDcd000865.23E-1292146No hitNo description
PROSITE patternPS000270120143IPR017970Homeobox, conserved site
SMARTSM003406.6E-20145188IPR003106Leucine zipper, homeobox-associated
PfamPF021832.1E-9145178IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGINDDLVLG LGLTTTEEHI SFNKSSSPSL TLSLFGPNKK VDKVLSNDGQ DRDSAASSLS  60
NVSVKRERDE EVETERVSSR VSDEDDDGSN GRKKLRLTKA QSALLEESFK LHSTLNPQEL  120
ARELKLRPRQ VEVWFQNRRA RTKLKQTEVD CELLKKCCET LSNENQRLQK ELQELKTLKL  180
VHPLYLQFPA ATLTMCPSCE KIGGGATTGG AENAAKRPFA KPQLYNCFNK T
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099420.11e-97homeobox-leucine zipper protein HAT22-like
SwissprotP466042e-71HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2G9H1F91e-100A0A2G9H1F9_9LAMI; Transcription factor HEX
STRINGVIT_00s0732g00010.t012e-89(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]