PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100254190111
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 234aa    MW: 25304.4 Da    PI: 9.7954
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100254190111genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.90.00021931321155
                                   HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Ote100254190111|100254190111  93 VRKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 132
                                   57778889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.26182131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1092145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.15E-692136No hitNo description
Gene3DG3DSA:4.10.280.108.8E-896138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MQNKIMENWE QQLLNNSSIT TSTGGAKRES AAASYAYGAG NIAFTAAKSS PPALSASPPK  60
SSESFIKCNN NSNGSSKKAK MNPTTSSQSG MKVRKEKLGD RITALHQLVS PFGKTDTASV  120
LLEAIGYIRF LQRQIEALSL PYLATGSPNS THQQPAPAVK RERSCLFPED PGQLLNERQR  180
KRKATPNEEC DKEARKDLKS RGLCLVPLSC TVDFGSENNG ADYWGPAAFG GNFQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078299.14e-87transcription factor bHLH68
SwissprotQ8S3D12e-60BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A4D9AXM43e-81A0A4D9AXM4_SALSN; Uncharacterized protein
STRINGXP_007160320.17e-78(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15192247
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]